Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 1.8e-28 128.6 69 100.0
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 4.4e-19 97.4 69 75.4
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 3.9e-15 84.3 70 72.9
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.5e-14 81.6 70 70.0
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 3.3e-14 81.3 69 69.6
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-14 80.9 69 68.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.3e-14 80.9 69 68.1
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 7.3e-14 80.1 74 62.2
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 9.6e-14 79.7 68 69.1
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.6e-14 79.7 69 66.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 9.6e-14 79.7 69 68.1
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.3e-13 79.3 65 70.8
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.1e-13 78.6 73 64.4
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.1e-13 78.6 69 68.1
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 2.8e-13 78.2 65 66.2
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.8e-13 78.2 65 72.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 4.8e-13 77.4 66 68.2
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 6.2e-13 77.0 65 66.2
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.2e-13 77.0 73 63.0
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.2e-13 77.0 73 63.0
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.1e-13 76.6 69 66.7
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 8.1e-13 76.6 65 69.2
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.1e-12 76.3 69 66.7
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-12 75.9 63 65.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.8e-12 75.5 69 65.2
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.4e-12 75.1 68 67.6
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 2.4e-12 75.1 69 62.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 3.1e-12 74.7 68 60.3
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 3.1e-12 74.7 65 69.2
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.1e-12 74.7 68 60.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 5.3e-12 73.9 65 67.7
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.3e-12 73.9 69 56.5
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.3e-12 73.9 69 56.5
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.3e-12 73.9 63 63.5
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.9e-12 73.6 65 67.7
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.2e-11 72.8 79 54.4
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.2e-11 72.8 69 63.8
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.2e-11 72.8 69 62.3
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 1.5e-11 72.4 74 58.1
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 1.5e-11 72.4 65 67.7
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.5e-11 72.4 69 63.8
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-11 72.0 70 61.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-11 72.0 70 61.4
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.0e-11 72.0 69 63.8
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 3.4e-11 71.2 79 53.2
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 4.5e-11 70.9 73 63.0
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 4.5e-11 70.9 73 63.0
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 4.5e-11 70.9 65 67.7
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 9.9e-11 69.7 79 51.9
MELO3C023781.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.9e-11 69.7 67 64.2
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.3e-10 69.3 69 60.9
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.7e-10 68.9 65 60.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.7e-10 68.9 66 54.5
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.2e-10 68.6 75 52.0
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 2.9e-10 68.2 76 51.3
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 2.9e-10 68.2 76 51.3
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 3.8e-10 67.8 77 50.6
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 4.9e-10 67.4 83 49.4
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 6.4e-10 67.0 71 60.6
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 8.4e-10 66.6 73 56.2
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.4e-10 66.6 68 58.8
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.1e-09 66.2 66 60.6
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.1e-09 66.2 64 67.2
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-09 66.2 61 65.6
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.4e-09 65.9 70 60.0
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 5.4e-09 63.9 81 50.6
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 5.4e-09 63.9 81 50.6
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 5.4e-09 63.9 72 55.6
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.2e-08 62.8 59 66.1
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.6e-08 62.4 66 57.6
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 3.5e-08 61.2 58 62.1
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-08 61.2 79 49.4
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 3.5e-08 61.2 41 73.2
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.6e-08 60.8 40 70.0
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 6.0e-08 60.5 79 49.4
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.8e-07 58.9 60 53.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.0e-07 58.2 61 50.8
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.1e-07 57.4 60 53.3
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.1e-06 56.2 65 46.2
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.9e-06 55.5 65 50.8
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 3.3e-06 54.7 65 50.8
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 3.3e-06 54.7 71 53.5
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 4.3e-06 54.3 65 49.2
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.6e-06 53.9 61 59.0
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.6e-06 53.9 65 47.7
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 5.6e-06 53.9 65 49.2
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.4e-06 53.5 64 50.0
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 7.4e-06 53.5 65 50.8
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 7.4e-06 53.5 65 50.8
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 7.4e-06 53.5 61 52.5
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 9.6e-06 53.1 74 45.9
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 9.6e-06 53.1 64 53.1


User provided reference genes

Program Settings