Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013976 Sechium edule HOM05D005953 ORTHO05D004056 4.0e-31 137.5 72 100.0
MELO3C013618.2 Cucumis melo HOM05D005953 ORTHO05D004056 9.0e-23 109.8 75 82.7
ClCG02G017620 Citrullus lanatus HOM05D005953 ORTHO05D004056 1.7e-21 105.5 73 79.5
GSVIVG01020541001 Vitis vinifera HOM05D005953 ORTHO05D004056 2.2e-16 88.6 79 65.8
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 2.2e-13 78.6 79 60.8
QL02p049480 Quercus lobata HOM05D005953 ORTHO05D004056 1.4e-12 75.9 74 63.5
QL08p038675 Quercus lobata HOM05D005953 ORTHO05D004056 1.4e-12 75.9 74 63.5
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 1.9e-12 75.5 77 61.0
Gohir.A04G103800 Gossypium hirsutum HOM05D005953 ORTHO05D004056 2.5e-12 75.1 76 57.9
Gohir.D04G143500 Gossypium hirsutum HOM05D005953 ORTHO05D004056 5.5e-12 73.9 76 57.9
Gorai.012G128900 Gossypium raimondii HOM05D005953 ORTHO05D004056 5.5e-12 73.9 76 57.9
Actinidia09855 Actinidia chinensis HOM05D005953 ORTHO05D004056 7.2e-12 73.6 74 58.1
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 1.2e-11 72.8 78 56.4
Migut.H01186 Erythranthe guttata HOM05D005953 ORTHO05D004056 1.2e-11 72.8 78 59.0
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 1.2e-11 72.8 82 59.8
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 1.8e-10 68.9 79 53.2
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 5.1e-10 67.4 72 56.9
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 1.1e-09 66.2 75 53.3
Hma1.2p1_1201F.1_g266560 Hydrangea macrophylla HOM05D005953 ORTHO05D004056 2.0e-09 65.5 79 53.2
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 2.0e-09 65.5 80 58.8
ClCG07G002930 Citrullus lanatus HOM05D005953 ORTHO05D004056 2.5e-09 65.1 82 53.7
CsaV3_7G004410 Cucumis sativus L. HOM05D005953 ORTHO05D004056 2.5e-09 65.1 83 56.6
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 2.5e-09 65.1 82 50.0
Oeu045817.1 Olea europaea HOM05D005953 ORTHO05D004056 3.3e-09 64.7 82 51.2
arahy.Tifrunner.gnm1.ann1.XD6XV6 Arachis hypogaea HOM05D005953 ORTHO05D004056 4.3e-09 64.3 73 54.8
MELO3C018738.2 Cucumis melo HOM05D005953 ORTHO05D004056 4.3e-09 64.3 84 54.8
Manes.12G089522 Manihot esculenta HOM05D005953 ORTHO05D004056 4.3e-09 64.3 77 55.8
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 9.7e-09 63.2 73 54.8
Sp7g26250 Schrenkiella parvula HOM05D005953 ORTHO05D004056 9.7e-09 63.2 77 49.4
Nitab4.5_0002575g0070 Nicotiana tabacum HOM05D005953 ORTHO05D004056 1.3e-08 62.8 81 50.6
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 1.7e-08 62.4 82 48.8
DCAR_013006 Daucus carota HOM05D005953 ORTHO05D004056 2.2e-08 62.0 88 46.6
MD17G1240800 Malus domestica HOM05D005953 ORTHO05D004056 2.2e-08 62.0 76 50.0
Lsat_1_v5_gn_8_134201 Lactuca sativa HOM05D005953 ORTHO05D004056 2.8e-08 61.6 74 50.0
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 4.8e-08 60.8 79 51.9
Eucgr.A01816 Eucalyptus grandis HOM05D005953 ORTHO05D004056 6.3e-08 60.5 80 50.0
Glyma.12G112600 Glycine max HOM05D005953 ORTHO05D004056 6.3e-08 60.5 73 54.8
HanXRQChr17g0541941 Helianthus annuus HOM05D005953 ORTHO05D004056 1.1e-07 59.7 81 50.6
TWI36G1201 Tripterygium wilfordii HOM05D005953 ORTHO05D004056 1.1e-07 59.7 72 51.4
BcaC07g38320 Brassica carinata HOM05D005953 ORTHO05D004056 1.4e-07 59.3 78 46.2
Carub.0007s1247 Capsella rubella HOM05D005953 ORTHO05D004056 1.4e-07 59.3 80 50.0
Potri.019G100601 Populus trichocarpa HOM05D005953 ORTHO05D004056 1.4e-07 59.3 73 54.8
ECA246G2973 Erigeron canadensis HOM05D005953 ORTHO05D004056 1.8e-07 58.9 74 48.6
Sabra13G0111400 Salix brachista HOM05D005953 ORTHO05D004056 1.8e-07 58.9 71 49.3
arahy.Tifrunner.gnm1.ann1.P9B1J4 Arachis hypogaea HOM05D005953 ORTHO05D004056 2.4e-07 58.5 73 49.3
CiPaw.03G176600 Carya illinoinensis HOM05D005953 ORTHO05D004056 2.4e-07 58.5 72 48.6
MD09G1247900 Malus domestica HOM05D005953 ORTHO05D004056 3.1e-07 58.2 80 47.5
Peaxi162Scf00132g00229 Petunia axillaris HOM05D005953 ORTHO05D004056 3.1e-07 58.2 80 50.0
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 4.1e-07 57.8 73 54.8
Lalb_Chr14g0366901 Lupinus albus HOM05D005953 ORTHO05D004056 4.1e-07 57.8 82 53.7
C08p10750 Brassica napus HOM05D005953 ORTHO05D004056 5.3e-07 57.4 78 46.2
BolC8t48747H Brassica oleracea HOM05D005953 ORTHO05D004056 5.3e-07 57.4 78 46.2
Sed0015284 Sechium edule HOM05D005953 ORTHO05D004056 6.9e-07 57.0 78 50.0
CDE02G2683 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 9.1e-07 56.6 77 48.1
PGR042G2028 Punica granatum HOM05D005953 ORTHO05D004056 1.2e-06 56.2 90 45.6
AT4G28290 Arabidopsis thaliana HOM05D005953 ORTHO05D004056 1.5e-06 55.8 84 42.9
BraA08t33974Z Brassica rapa HOM05D005953 ORTHO05D004056 1.5e-06 55.8 78 48.7
DCAR_009746 Daucus carota HOM05D005953 ORTHO05D004056 1.5e-06 55.8 75 48.0
HanXRQChr17g0556381 Helianthus annuus HOM05D005953 ORTHO05D004056 1.5e-06 55.8 73 47.9
Nn1g04077 Nelumbo nucifera HOM05D005953 ORTHO05D004056 1.5e-06 55.8 84 47.6
Nitab4.5_0002253g0010 Nicotiana tabacum HOM05D005953 ORTHO05D004056 1.5e-06 55.8 81 46.9
BolC1t02424H Brassica oleracea HOM05D005953 ORTHO05D004056 2.0e-06 55.5 80 45.0
DCAR_021242 Daucus carota HOM05D005953 ORTHO05D004056 2.0e-06 55.5 72 43.1
Psat0s741g0120 Pisum sativum HOM05D005953 ORTHO05D004056 2.0e-06 55.5 75 48.0
PGSC0003DMG400018306 Solanum tuberosum HOM05D005953 ORTHO05D004056 2.0e-06 55.5 78 50.0
BcaB03g12563 Brassica carinata HOM05D005953 ORTHO05D004056 2.6e-06 55.1 81 43.2
BcaB03g12564 Brassica carinata HOM05D005953 ORTHO05D004056 2.6e-06 55.1 81 43.2
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 2.6e-06 55.1 79 50.6
MBI04_g22063_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 2.6e-06 55.1 75 48.0
AL7G24310 Arabidopsis lyrata HOM05D005953 ORTHO05D004056 3.4e-06 54.7 81 42.0
Gorai.005G201700 Gossypium raimondii HOM05D025024 ORTHO05D004056 3.4e-06 54.7 62 48.4
Solyc07g054060.3 Solanum lycopersicum HOM05D005953 ORTHO05D004056 3.4e-06 54.7 74 47.3
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 3.4e-06 54.7 83 48.2
HPP92_014946 Vanilla planifolia HOM05D005953 ORTHO05D004056 3.4e-06 54.7 81 50.6
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 4.5e-06 54.3 69 47.8
Lj3g0009023 Lotus japonicus HOM05D005953 ORTHO05D004056 4.5e-06 54.3 79 48.1
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 4.5e-06 54.3 73 49.3
Sopen07g028000 Solanum pennellii HOM05D005953 ORTHO05D004056 4.5e-06 54.3 74 47.3
Sopen10g004210 Solanum pennellii HOM05D005953 ORTHO05D004056 4.5e-06 54.3 32 84.4
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 5.9e-06 53.9 83 45.8
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 5.9e-06 53.9 76 46.1
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 5.9e-06 53.9 79 49.4
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 5.9e-06 53.9 79 49.4
Manes.13G147000 Manihot esculenta HOM05D005953 ORTHO05D004056 5.9e-06 53.9 77 45.5
SEGI_25776 Sequoiadendron giganteum HOM05D025024 ORTHO05D004056 5.9e-06 53.9 72 44.4
Solyc10g008350.4 Solanum lycopersicum HOM05D005953 ORTHO05D004056 5.9e-06 53.9 32 81.2
HPP92_014983 Vanilla planifolia HOM05D005953 ORTHO05D004056 5.9e-06 53.9 81 50.6
Lsat_1_v5_gn_3_37261 Lactuca sativa HOM05D005953 ORTHO05D004056 7.7e-06 53.5 75 45.3
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 7.7e-06 53.5 73 49.3
Prupe.3G137400 Prunus persica HOM05D005953 ORTHO05D004056 7.7e-06 53.5 82 43.9


User provided reference genes

Program Settings