Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.9e-119 432.6 223 100.0
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.4e-106 389.8 223 89.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.0e-90 334.3 222 76.1
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.2e-89 333.6 221 76.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-88 330.1 221 78.3
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.3e-88 330.1 222 74.8
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 8.5e-88 327.4 221 76.9
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 6.1e-86 321.2 223 74.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 4.0e-85 318.5 213 76.5
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 5.2e-85 318.2 244 70.1
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 6.8e-85 317.8 222 74.3
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.5e-84 316.6 218 72.9
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.5e-84 316.6 221 76.0
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.5e-84 316.6 213 76.5
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.0e-84 316.2 221 76.0
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.6e-84 315.8 213 73.7
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.6e-84 315.8 224 73.2
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 3.4e-84 315.5 213 75.6
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.4e-84 315.5 224 73.7
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.4e-84 315.5 214 74.8
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.4e-84 315.1 220 74.5
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 9.8e-84 313.9 213 74.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 9.8e-84 313.9 220 74.1
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 2.2e-83 312.8 223 71.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.2e-83 312.8 221 76.0
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.8e-83 312.4 213 74.2
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.8e-83 312.4 224 71.4
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 3.7e-83 312.0 210 72.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 6.3e-83 311.2 218 72.5
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 8.3e-83 310.8 221 75.1
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 8.3e-83 310.8 221 72.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.4e-82 310.1 224 72.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.4e-82 309.3 226 73.0
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.4e-82 309.3 224 71.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.4e-82 308.1 226 73.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 7.0e-82 307.8 204 75.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 9.1e-82 307.4 225 71.1
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-81 307.0 224 71.0
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.2e-81 307.0 228 71.1
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.6e-81 306.6 208 73.6
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-81 306.6 213 74.2
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.6e-81 306.6 221 73.8
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.0e-81 306.2 220 71.4
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 2.7e-81 305.8 223 70.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-80 303.9 223 71.7
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.0e-80 303.9 223 71.7
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.0e-80 303.9 226 72.6
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.3e-80 303.5 224 70.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-80 303.5 224 70.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.3e-80 303.5 223 71.3
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.3e-80 303.5 204 74.5
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.7e-80 303.1 221 70.6
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.9e-80 302.4 221 70.6
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 3.8e-80 302.0 213 72.8
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 3.8e-80 302.0 219 70.8
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.8e-80 302.0 218 72.0
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 5.0e-80 301.6 213 71.4
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 5.0e-80 301.6 224 71.0
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 6.5e-80 301.2 224 70.5
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 6.5e-80 301.2 218 71.6
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 6.5e-80 301.2 210 74.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 8.5e-80 300.8 223 69.5
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 1.5e-79 300.1 229 69.0
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.9e-79 299.7 207 74.9
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.5e-79 299.3 213 72.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 3.2e-79 298.9 224 69.6
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.2e-79 298.9 209 73.2
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 3.2e-79 298.9 222 69.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 4.2e-79 298.5 225 68.9
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 7.2e-79 297.7 202 74.3
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 9.4e-79 297.4 224 69.2
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-78 296.6 215 71.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.6e-78 295.4 213 70.9
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 4.7e-78 295.0 219 68.5
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.7e-78 295.0 204 75.0
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.7e-78 295.0 204 75.0
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.7e-78 295.0 221 70.1
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.1e-78 294.7 231 67.5
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 6.1e-78 294.7 230 67.0
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 8.0e-78 294.3 213 70.4
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 8.0e-78 294.3 214 72.4
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 8.0e-78 294.3 209 72.2
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 8.0e-78 294.3 209 72.2
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 1.0e-77 293.9 281 59.4
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.8e-77 293.1 217 69.1
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.3e-77 292.7 221 69.2
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 4.0e-77 292.0 224 65.6
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 6.8e-77 291.2 220 69.1
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 6.8e-77 291.2 221 69.2
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.5e-76 287.7 220 67.3
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 7.5e-76 287.7 242 65.3
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 7.5e-76 287.7 213 67.1
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 2.2e-75 286.2 220 67.7
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.7e-75 285.4 221 68.3
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 4.9e-75 285.0 220 66.4
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 6.3e-75 284.6 222 69.4
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 6.3e-75 284.6 221 67.0
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 8.3e-75 284.3 213 69.5
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 5.4e-74 281.6 224 65.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 9.2e-74 280.8 224 65.6
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-73 280.0 224 65.6
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-73 279.6 218 65.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 3.5e-73 278.9 208 68.3
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-73 278.1 224 65.6
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.3e-72 276.9 215 65.6
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.3e-72 276.2 221 65.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 6.6e-72 274.6 253 59.3
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.1e-71 273.9 219 66.2
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.9e-71 273.1 212 64.6
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.2e-70 270.4 245 61.6
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.6e-70 270.0 210 63.8
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.4e-69 266.9 169 79.3
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 1.2e-68 263.8 221 64.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.2e-68 263.8 228 63.2
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.5e-68 263.5 221 64.3
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.4e-68 262.3 224 65.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.7e-67 260.0 225 64.4
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-67 260.0 230 61.7
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-66 256.9 163 79.8
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.2e-65 253.8 315 48.3
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 4.6e-65 251.9 170 73.5
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 7.8e-65 251.1 198 62.6
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.0e-64 249.2 220 59.1
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.1e-63 247.3 129 92.2
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 8.9e-61 237.7 228 61.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.2e-58 229.2 230 51.7
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.1e-58 228.8 172 69.2
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 7.0e-58 228.0 216 57.9
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.2e-57 227.3 301 48.5
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 6.0e-57 224.9 223 61.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 8.6e-56 221.1 210 57.1
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.5e-55 219.5 205 59.5
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 2.5e-55 219.5 129 81.4
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.1e-53 212.6 210 52.4
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.1e-53 212.6 222 51.8
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.1e-53 212.6 175 57.1
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 9.8e-52 207.6 145 71.7
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.9e-50 203.4 117 79.5
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 5.4e-50 201.8 166 66.9
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.7e-48 196.8 251 42.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.6e-48 194.5 164 61.6
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 4.3e-47 192.2 162 64.2
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.8e-46 189.5 120 75.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 3.6e-46 189.1 103 84.5
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 7.3e-39 164.9 218 45.0
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.6e-38 162.5 220 45.5
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 9.9e-36 154.5 143 60.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.3e-35 154.1 186 45.2
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.4e-34 149.8 178 51.7
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 2.4e-34 149.8 189 49.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 8.1e-30 134.8 80 80.0
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.4e-29 133.3 132 61.4
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-25 120.9 120 60.0
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 1.8e-24 117.1 75 74.7
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-22 110.5 140 49.3
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.4e-21 107.5 112 53.6
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.4e-21 106.7 167 40.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.5e-20 104.0 60 75.0
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 5.8e-20 102.1 67 74.6
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-19 100.5 81 63.0
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 2.2e-19 100.1 82 63.4
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 6.4e-19 98.6 59 79.7
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 8.4e-19 98.2 93 58.1
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.4e-18 96.7 196 36.7
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 9.3e-18 94.7 93 55.9
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 3.9e-16 89.4 168 35.7
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.3e-14 84.3 138 39.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 4.5e-12 75.9 92 47.8
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 4.9e-11 72.4 164 33.5
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.3e-08 64.3 67 53.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.8e-08 63.9 46 65.2
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.3e-08 63.5 52 61.5
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 3.7e-06 56.2 49 51.0
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 4.8e-06 55.8 38 68.4
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 8.2e-06 55.1 123 35.0


User provided reference genes

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