Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 5.6e-62 240.7 118 100.0
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.0e-60 235.0 118 96.6
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.0e-60 235.0 118 96.6
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 4.0e-60 234.6 118 96.6
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.3e-54 214.5 119 88.2
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.8e-53 211.8 119 88.2
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.6e-53 211.5 115 86.1
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 3.6e-53 211.5 118 85.6
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 8.0e-53 210.3 118 86.4
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.4e-52 209.5 118 84.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.8e-52 209.1 119 83.2
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.8e-52 209.1 115 85.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.3e-52 208.8 117 83.8
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 3.1e-52 208.4 119 82.4
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 3.1e-52 208.4 119 85.7
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.1e-52 208.4 119 85.7
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 5.2e-52 207.6 115 83.5
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 5.2e-52 207.6 115 87.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 5.2e-52 207.6 115 87.0
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 6.8e-52 207.2 119 81.5
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 6.8e-52 207.2 119 81.5
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 6.8e-52 207.2 119 81.5
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 6.8e-52 207.2 119 85.7
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 6.8e-52 207.2 120 85.8
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 8.9e-52 206.8 119 81.5
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.2e-51 206.5 119 81.5
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.2e-51 206.5 119 81.5
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.2e-51 206.5 119 81.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-51 206.5 119 84.9
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.2e-51 206.5 115 86.1
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.5e-51 206.1 119 82.4
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.5e-51 206.1 119 84.9
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-51 206.1 119 84.0
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.0e-51 205.7 119 80.7
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.0e-51 205.7 119 84.9
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.6e-51 205.3 119 80.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.6e-51 205.3 119 80.7
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 2.6e-51 205.3 115 85.2
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.6e-51 205.3 119 84.0
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 3.4e-51 204.9 115 87.8
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 4.4e-51 204.5 119 80.7
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 5.8e-51 204.1 118 83.1
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 83.2
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 7.5e-51 203.8 114 84.2
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.8e-51 203.4 119 84.0
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 9.8e-51 203.4 115 81.7
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 9.8e-51 203.4 116 82.8
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.7e-50 202.6 118 86.4
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.7e-50 202.6 115 82.6
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.7e-50 202.6 115 82.6
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.7e-50 202.6 115 82.6
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.9e-50 201.8 115 80.9
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 79.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 2.9e-50 201.8 118 80.5
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.9e-50 201.8 115 83.5
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 4.9e-50 201.1 115 83.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 4.9e-50 201.1 116 83.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 6.4e-50 200.7 115 84.3
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 6.4e-50 200.7 115 84.3
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 6.4e-50 200.7 115 84.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 6.4e-50 200.7 113 85.0
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 6.4e-50 200.7 113 85.0
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 8.3e-50 200.3 119 79.0
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 8.3e-50 200.3 115 80.9
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.1e-49 199.9 118 83.9
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 82.6
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.4e-49 199.5 118 81.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 83.8
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.4e-49 199.5 115 80.0
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.4e-49 199.5 114 83.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.9e-49 199.1 115 82.6
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.9e-49 199.1 115 82.6
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.0
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.0
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.0
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.0
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 79.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 2.4e-49 198.7 126 79.4
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.2e-49 198.4 115 82.6
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 3.2e-49 198.4 115 82.6
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 5.4e-49 197.6 116 81.9
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 5.4e-49 197.6 119 78.2
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.0e-49 197.2 115 79.1
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 7.0e-49 197.2 118 78.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.2e-49 196.8 118 78.0
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 9.2e-49 196.8 115 79.1
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 9.2e-49 196.8 116 81.9
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 9.2e-49 196.8 119 78.2
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.6e-48 196.1 115 78.3
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.5e-48 194.9 114 79.8
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.8e-48 193.7 116 81.9
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.0e-47 193.4 115 81.7
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.0e-47 193.4 118 78.0
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 80.3
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 81.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 81.2
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 77.1
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.7e-47 192.6 118 77.1
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.3e-47 192.2 118 75.4
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.0e-47 191.8 118 75.4
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 8.6e-47 190.3 114 78.9
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.5e-46 189.5 117 81.2
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.5e-46 189.5 121 74.4
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.5e-46 188.7 114 78.9
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 3.3e-46 188.3 118 79.7
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 4.3e-46 188.0 116 75.9
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 7.3e-46 187.2 120 75.8
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 9.5e-46 186.8 135 68.9
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 9.5e-46 186.8 115 75.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 4.7e-45 184.5 131 67.9
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.3e-44 182.2 114 77.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.2e-43 179.9 165 58.2
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 3.4e-43 178.3 119 70.6
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 5.8e-43 177.6 118 69.5
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 6.4e-42 174.1 118 67.8
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 6.4e-42 174.1 118 67.8
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 8.3e-42 173.7 115 76.5
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.3e-39 165.6 100 80.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.3e-39 165.6 100 80.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.6e-39 163.7 97 80.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 8.6e-39 163.7 100 78.0
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 1.1e-38 163.3 96 81.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.5e-38 162.9 98 82.7
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 3.3e-38 161.8 117 71.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 3.3e-38 161.8 116 69.8
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 8.1e-37 157.1 101 75.2
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.1e-36 155.2 99 75.8
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.5e-35 152.9 122 63.9
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 7.6e-35 150.6 99 70.7
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.7e-34 149.4 110 60.9
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.2e-34 149.1 103 69.9
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 5.4e-33 144.4 115 60.9
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 6.0e-32 141.0 112 58.9
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.3e-31 139.8 115 57.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.6e-29 132.9 95 69.5
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 3.1e-28 128.6 97 67.0
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.6e-27 125.6 118 54.2
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.7e-23 112.8 65 80.0
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 5.1e-23 111.3 65 84.6
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 6.6e-23 110.9 69 76.8
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.5e-22 109.0 71 78.9
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 4.3e-22 108.2 57 87.7
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 5.6e-22 107.8 54 90.7
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 7.3e-22 107.5 67 76.1
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-21 106.3 66 75.8
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.1e-21 105.9 71 74.6
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 3.6e-21 105.1 160 41.9
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.6e-21 105.1 59 83.1
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 4.8e-21 104.8 52 92.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.1e-20 103.6 59 83.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 5.3e-20 101.3 61 77.0
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 9.0e-20 100.5 59 81.4
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.9e-18 95.5 50 84.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.9e-18 94.7 50 86.0
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-17 93.2 53 79.2
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.2e-16 90.1 129 39.5
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.0e-15 87.0 137 38.0
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 9.0e-12 73.9 55 69.1
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 3.8e-10 68.6 72 48.6
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 2.3e-07 59.3 35 80.0
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 3.0e-07 58.9 116 33.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 8.7e-07 57.4 99 43.4


User provided reference genes

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