Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.8e-77 292.0 157 100.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-40 169.1 160 66.2
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-33 146.7 151 60.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.0e-31 140.6 154 59.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.7e-29 132.1 153 52.3
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-28 130.6 153 52.3
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.1e-28 130.6 153 52.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.4e-28 130.2 153 52.3
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 4.1e-28 128.6 143 55.2
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 2.0e-27 126.3 162 50.6
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 4.5e-27 125.2 159 50.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 5.9e-27 124.8 161 52.8
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.3e-26 123.6 142 52.8
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.7e-26 123.2 152 51.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.7e-26 123.2 162 49.4
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 2.9e-26 122.5 142 52.1
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 8.5e-26 120.9 166 48.8
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.5e-25 120.2 145 52.4
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.5e-25 120.2 155 50.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.9e-25 119.8 179 49.7
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 7.2e-25 117.9 161 49.7
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 7.2e-25 117.9 147 48.3
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.2e-24 117.1 156 46.2
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 6.1e-24 114.8 141 51.8
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.8e-23 113.2 143 52.4
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.8e-23 113.2 156 48.7
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 5.2e-23 111.7 195 44.1
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 5.2e-23 111.7 145 51.0
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 6.8e-23 111.3 145 53.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 8.8e-23 110.9 109 59.6
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 8.8e-23 110.9 134 51.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.5e-22 110.2 133 53.4
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.4e-22 109.0 151 47.7
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.4e-22 108.6 139 47.5
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.4e-22 108.6 139 47.5
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 9.8e-22 107.5 149 50.3
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.3e-21 107.1 131 49.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.3e-21 107.1 171 45.6
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-21 107.1 146 48.6
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.7e-21 106.7 151 49.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.2e-21 106.3 165 46.7
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.7e-21 105.5 165 46.7
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 3.7e-21 105.5 170 41.8
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.7e-21 105.5 139 49.6
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.8e-21 105.1 146 48.6
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 4.8e-21 105.1 146 48.6
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 4.8e-21 105.1 169 43.8
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 4.8e-21 105.1 169 43.8
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.8e-21 105.1 135 48.1
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 6.3e-21 104.8 173 44.5
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 6.3e-21 104.8 137 48.2
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 8.3e-21 104.4 149 46.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.1e-20 104.0 149 47.0
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 9.1e-20 100.9 132 50.0
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.2e-19 100.5 172 45.3
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.6e-19 100.1 155 45.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.6e-19 100.1 192 39.1
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.6e-19 100.1 170 45.3
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.0e-19 99.8 166 45.8
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.5e-19 99.0 156 42.3
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.5e-19 99.0 169 43.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.5e-19 99.0 169 43.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 3.5e-19 99.0 189 41.3
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.5e-19 98.6 138 50.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 5.9e-19 98.2 158 43.7
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.0e-18 97.4 150 46.0
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.7e-18 96.7 232 37.1
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.3e-18 96.3 186 43.5
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.9e-18 95.9 233 36.9
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.9e-18 95.9 185 41.1
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.9e-18 95.9 210 39.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.8e-18 95.5 210 37.1
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.0e-18 95.1 179 42.5
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 6.5e-18 94.7 151 45.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 8.6e-18 94.4 117 49.6
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 8.6e-18 94.4 155 43.9
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.1e-17 94.0 179 41.9
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-17 94.0 230 37.0
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.1e-17 94.0 159 42.1
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.5e-17 93.6 165 43.0
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.5e-17 93.6 165 43.0
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.5e-17 93.6 206 38.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.5e-17 93.6 92 55.4
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 3.3e-17 92.4 162 43.2
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.2e-17 92.0 159 40.3
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.5e-17 91.7 176 41.5
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 7.2e-17 91.3 177 41.2
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 7.2e-17 91.3 170 41.2
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.2e-16 90.5 186 41.9
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.6e-16 90.1 155 45.2
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.6e-16 90.1 190 37.9
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 2.8e-16 89.4 197 38.6
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 3.6e-16 89.0 145 41.4
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 4.7e-16 88.6 159 40.9
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 8.0e-16 87.8 177 38.4
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 8.0e-16 87.8 142 47.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 8.0e-16 87.8 183 38.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 8.0e-16 87.8 146 44.5
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.4e-15 87.0 169 40.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.0e-15 85.9 189 38.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.0e-15 85.9 119 48.7
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 4.0e-15 85.5 139 43.9
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 4.0e-15 85.5 139 43.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 4.0e-15 85.5 174 37.9
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 6.8e-15 84.7 165 40.0
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.5e-14 83.6 161 41.0
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 3.4e-14 82.4 142 44.4
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.7e-14 81.6 85 52.9
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 7.5e-14 81.3 156 43.6
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 7.5e-14 81.3 130 43.8
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 7.5e-14 81.3 130 43.8
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 9.8e-14 80.9 174 38.5
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.3e-13 80.5 120 44.2
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.7e-13 80.1 174 37.9
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.8e-13 79.3 174 37.4
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 6.3e-13 78.2 90 55.6
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 6.3e-13 78.2 192 38.0
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 8.3e-13 77.8 154 38.3
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.8e-12 76.6 102 50.0
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.1e-12 75.5 131 42.0
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 5.4e-12 75.1 180 35.6
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 7.0e-12 74.7 170 35.9
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.7e-11 72.8 85 55.3
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.0e-10 70.9 71 62.0
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.7e-10 70.1 179 39.1
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 8.6e-10 67.8 85 51.8
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.1e-09 67.4 95 46.3
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.3e-09 65.5 168 34.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 5.6e-09 65.1 54 61.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 7.3e-09 64.7 96 47.9
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.6e-08 63.5 128 38.3
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 2.1e-08 63.2 97 46.4
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.1e-08 63.2 97 46.4
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.8e-08 62.8 80 48.8
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.7e-08 62.0 120 39.2
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 4.0e-07 58.9 46 63.0
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.5e-06 57.0 43 62.8
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.4e-06 55.8 93 43.0
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.4e-06 55.8 93 43.0
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.4e-06 55.8 93 43.0


User provided reference genes

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