Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 9.0e-177 623.6 347 100.0
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.8e-146 522.3 353 79.6
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.5e-144 516.5 353 78.2
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 6.3e-130 468.0 320 78.1
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.4e-121 440.3 353 67.1
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 7.7e-120 434.5 352 66.2
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 8.5e-119 431.0 354 68.4
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.5e-118 430.3 354 65.8
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.9e-118 429.9 350 65.7
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.9e-118 429.9 350 65.7
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 3.2e-118 429.1 356 66.3
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.2e-117 427.2 332 67.8
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 4.7e-117 425.2 353 66.3
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 6.1e-117 424.9 349 65.6
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.0e-116 424.1 352 65.1
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 1.4e-116 423.7 335 68.4
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 1.4e-116 423.7 335 68.4
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.8e-116 423.3 338 66.6
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.8e-116 423.3 361 65.7
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 3.0e-116 422.5 334 66.5
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 4.0e-116 422.2 339 65.5
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 4.0e-116 422.2 328 65.9
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 5.2e-116 421.8 353 65.4
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 5.2e-116 421.8 354 64.4
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.4e-115 419.1 338 66.9
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.4e-115 419.1 351 65.0
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 5.7e-115 418.3 346 65.6
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 7.5e-115 417.9 332 67.5
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 7.5e-115 417.9 335 65.4
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 9.7e-115 417.5 327 69.1
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.3e-114 417.2 320 68.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.3e-114 417.2 332 66.6
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.3e-114 417.2 353 66.3
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.3e-114 417.2 255 80.8
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.7e-114 416.8 255 80.4
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 2.2e-114 416.4 255 81.2
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 6.3e-114 414.8 338 67.2
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 6.3e-114 414.8 338 67.2
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 6.3e-114 414.8 331 68.3
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.3e-114 414.8 332 66.6
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 6.3e-114 414.8 349 65.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 8.3e-114 414.5 349 64.5
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 8.3e-114 414.5 353 64.3
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 4.1e-113 412.1 354 67.8
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.1e-113 412.1 335 64.8
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-112 410.2 339 65.2
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-112 410.2 339 65.2
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 1.6e-112 410.2 351 62.7
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.7e-112 409.5 255 79.6
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.9e-112 408.3 351 63.0
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.0e-111 407.5 327 65.4
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.0e-111 407.5 331 65.9
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.7e-111 406.8 339 64.0
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 8.5e-111 404.4 301 72.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 8.5e-111 404.4 353 63.2
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.9e-110 403.3 362 61.3
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 3.2e-110 402.5 331 63.1
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.2e-110 402.1 347 64.6
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 5.5e-110 401.7 335 63.6
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 7.2e-110 401.4 335 63.6
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 7.2e-110 401.4 255 78.4
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 7.2e-110 401.4 300 69.0
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.1e-109 399.8 348 60.9
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.7e-109 399.4 336 64.9
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.7e-109 398.7 352 62.2
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.4e-108 397.1 321 67.9
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.3e-108 396.4 299 67.6
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 3.0e-108 396.0 336 62.2
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 5.2e-108 395.2 302 66.9
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 8.8e-108 394.4 255 74.5
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.5e-107 393.7 334 62.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.5e-107 393.7 334 61.4
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 3.4e-107 392.5 299 66.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 3.4e-107 392.5 329 63.5
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 9.8e-107 391.0 319 63.6
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 2.2e-106 389.8 345 62.6
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 4.8e-106 388.7 255 74.5
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 4.8e-106 388.7 324 68.8
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.1e-105 387.5 338 61.2
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.1e-105 386.0 335 61.5
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 5.4e-105 385.2 300 69.3
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 5.4e-105 385.2 325 66.2
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 7.0e-105 384.8 342 59.4
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.6e-104 383.6 300 65.0
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 4.5e-104 382.1 301 64.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 2.5e-102 376.3 253 73.5
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 6.1e-101 371.7 327 63.0
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.3e-100 369.8 228 78.9
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 6.3e-98 361.7 346 59.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 8.3e-98 361.3 356 64.6
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 9.2e-97 357.8 261 68.2
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.0e-91 340.1 256 62.1
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 3.0e-87 326.2 304 60.9
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 6.2e-85 318.5 260 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 5.6e-78 295.4 251 57.4
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.1e-77 293.5 255 60.0
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.8e-76 290.4 305 55.7
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 3.2e-73 279.6 260 51.9
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-70 271.2 163 81.0
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 6.2e-69 265.4 173 75.7
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.1e-68 264.6 258 48.8
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.1e-63 245.7 189 65.1
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 8.7e-63 245.0 224 51.8
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.5e-62 243.4 144 82.6
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.0e-47 194.9 132 75.0
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-47 194.1 126 76.2
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-47 194.1 126 76.2
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.3e-45 188.0 134 71.6
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.7e-45 186.4 132 71.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.9e-41 174.1 279 35.8
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.1e-38 164.9 235 38.3
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.1e-30 138.3 238 36.6
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 5.7e-30 136.0 104 67.3
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 3.9e-23 113.2 156 46.8
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 8.2e-21 105.5 92 60.9
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 4.1e-20 103.2 83 63.9
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-19 101.3 202 38.1
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-19 100.9 53 86.8
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 4.7e-16 89.7 80 53.8
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 7.2e-09 65.9 130 35.4
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.1e-08 64.3 35 82.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.6e-08 63.5 115 40.9
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 2.3e-07 60.8 130 33.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.1e-06 58.5 77 49.4
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.1e-06 58.5 77 49.4
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.3e-06 57.0 34 73.5


User provided reference genes

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