Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 9.2e-110 400.2 198 100.0
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.4e-97 359.8 198 88.9
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.3e-97 359.0 197 88.3
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 1.5e-96 356.3 198 87.9
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 6.0e-93 344.4 189 87.8
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 5.2e-89 331.3 196 79.1
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 1.5e-88 329.7 196 79.6
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.9e-88 327.0 198 77.8
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 6.4e-87 324.3 196 77.6
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 1.4e-86 323.2 197 76.6
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.9e-86 322.8 197 77.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.2e-85 320.1 197 76.1
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.6e-84 314.3 198 75.3
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 6.6e-84 314.3 198 72.7
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.9e-83 312.8 198 73.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.5e-83 312.4 198 72.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 4.3e-83 311.6 198 73.2
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 7.3e-83 310.8 198 73.7
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 72.2
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 8.1e-82 307.4 198 73.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.8e-81 306.2 198 71.7
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.8e-81 306.2 198 72.7
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 71.7
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 72.2
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 71.2
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 73.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.2e-80 303.5 198 70.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.2e-80 303.5 195 71.3
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 70.2
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 73.2
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 72.7
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.6e-80 302.4 197 69.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 71.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 70.2
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.4e-80 302.0 197 72.6
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 4.4e-80 301.6 197 73.6
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 71.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 7.6e-80 300.8 197 72.1
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 69.7
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 1.3e-79 300.1 197 69.5
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.7e-79 299.7 198 70.7
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 2.2e-79 299.3 198 72.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.2e-79 299.3 198 71.7
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.9e-79 298.9 183 76.0
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.8e-79 298.5 198 72.7
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 4.9e-79 298.1 197 69.0
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 70.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 8.4e-79 297.4 196 70.4
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 70.2
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.4e-78 296.6 196 70.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 69.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.9e-78 296.2 196 69.4
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 1.9e-78 296.2 196 70.4
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 3.2e-78 295.4 197 69.0
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.2e-78 295.4 196 70.4
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 70.2
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 70.7
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 70.7
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 71.2
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 70.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 7.1e-78 294.3 197 72.1
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.2e-77 293.5 197 68.0
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.6e-77 293.1 197 71.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.1e-77 292.7 198 70.2
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.7e-77 292.4 191 71.2
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 68.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.6e-77 291.6 198 70.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 4.6e-77 291.6 198 69.2
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 68.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.0e-76 290.4 183 72.1
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 67.7
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 69.2
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 67.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 69.7
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 3.9e-76 288.5 198 69.7
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 3.9e-76 288.5 196 68.4
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 68.2
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 68.2
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 8.7e-76 287.3 198 68.2
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.5e-75 286.6 197 69.0
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.5e-75 285.8 198 68.2
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.3e-75 285.4 197 69.0
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 4.3e-75 285.0 198 68.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 4.3e-75 285.0 186 74.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 67.2
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 67.2
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 7.3e-75 284.3 197 68.0
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 7.3e-75 284.3 184 72.3
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 9.6e-75 283.9 191 72.3
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.3e-74 283.5 199 67.3
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 67.2
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 66.7
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 65.2
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.1e-74 282.7 196 67.3
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.8e-74 282.3 183 73.2
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 3.6e-74 282.0 198 68.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 4.8e-74 281.6 192 68.8
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.8e-74 281.6 184 71.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 4.8e-74 281.6 184 71.7
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 6.2e-74 281.2 186 72.6
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 8.1e-74 280.8 186 73.1
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 8.1e-74 280.8 198 65.2
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.1e-73 280.4 199 67.8
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.4e-73 280.0 187 69.5
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 4.0e-73 278.5 197 64.0
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.0e-73 278.5 198 65.2
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.2e-72 276.9 191 67.0
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.2e-72 276.9 198 66.2
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.2e-70 268.9 178 69.7
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 7.1e-70 267.7 199 65.8
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 4.6e-69 265.0 198 62.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 6.0e-69 264.6 196 65.3
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 1.1e-67 260.4 198 62.6
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.9e-67 259.6 196 63.8
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-66 256.5 183 65.6
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 4.2e-62 241.9 198 57.6
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 2.1e-61 239.6 196 59.2
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 8.7e-60 234.2 187 56.7
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.8e-58 229.2 183 59.6
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 3.7e-58 228.8 184 60.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.4e-57 226.9 170 65.9
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.8e-57 226.5 144 69.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.4e-57 226.1 143 72.7
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 9.0e-57 224.2 144 70.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 2.2e-55 219.5 187 54.5
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.9e-54 216.5 194 53.6
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 5.5e-54 214.9 155 67.1
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.1e-53 213.0 197 54.3
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.8e-52 209.9 144 63.2
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.9e-52 208.8 156 60.3
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.6e-50 203.4 198 51.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 6.1e-45 184.9 114 71.9
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.5e-43 180.3 126 66.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.5e-43 179.5 198 51.0
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 5.3e-41 171.8 198 48.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 9.1e-41 171.0 98 78.6
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.1e-37 159.8 188 44.7
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.1e-35 154.1 183 50.3
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 9.4e-30 134.4 181 40.3
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 7.7e-24 114.8 68 73.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.0e-23 114.4 74 63.5
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.2e-22 109.0 106 48.1
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 5.5e-22 108.6 179 34.1
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.0e-20 104.4 120 44.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.8e-20 103.6 194 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.0e-19 100.1 124 44.4
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.8e-18 96.3 123 43.9
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.8e-18 95.5 71 59.2
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.0e-17 91.7 103 46.6
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.0e-15 85.5 58 70.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 5.9e-08 62.0 43 62.8
Cre03.g145427 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 1.1e-06 57.8 108 32.4
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 1.9e-06 57.0 35 74.3


User provided reference genes

Program Settings