Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 3.0e-238 828.2 442 100.0
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 8.1e-191 670.6 440 82.7
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.8e-190 669.5 476 77.5
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.5e-157 560.1 437 66.6
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 2.6e-144 516.2 437 62.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 6.3e-143 511.5 439 61.7
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.9e-139 500.0 437 61.1
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 4.2e-139 498.8 437 60.2
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.1e-138 496.5 437 60.9
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 4.7e-138 495.4 438 60.5
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.4e-137 493.8 542 51.7
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 5.2e-137 491.9 437 59.7
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 6.8e-137 491.5 418 61.5
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 6.8e-137 491.5 375 68.5
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 6.8e-137 491.5 437 58.8
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.3e-135 487.3 439 59.2
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 7.7e-133 478.0 445 59.1
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.7e-132 476.9 426 60.1
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 5.5e-131 471.9 428 58.4
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-130 470.7 438 58.2
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.0e-129 467.6 437 56.3
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.5e-128 463.8 438 57.3
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.4e-128 462.6 440 58.0
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 4.4e-128 462.2 435 57.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 6.1e-122 441.8 437 54.7
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 8.0e-122 441.4 437 54.0
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 5.2e-121 438.7 440 54.3
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 6.8e-121 438.3 437 54.0
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.2e-120 437.6 443 54.9
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.7e-119 433.7 440 53.6
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 8.3e-119 431.4 437 53.5
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.1e-118 431.0 437 51.7
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.9e-118 430.3 369 61.0
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.4e-118 429.9 440 55.0
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.4e-118 429.9 392 58.7
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 2.0e-117 426.8 431 54.5
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.7e-117 426.4 437 51.3
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 2.3e-116 423.3 432 52.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.5e-115 420.6 425 51.8
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.5e-115 420.6 437 53.8
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.5e-115 420.6 438 52.5
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.5e-115 419.9 437 51.9
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 3.3e-115 419.5 465 51.0
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 5.6e-115 418.7 439 51.9
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 6.8e-113 411.8 437 51.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 8.9e-113 411.4 438 52.5
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 8.9e-113 411.4 437 48.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 1.2e-112 411.0 438 51.4
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.4e-112 409.5 425 51.8
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 3.4e-112 409.5 436 53.2
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 4.4e-112 409.1 425 52.0
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 4.9e-111 405.6 444 52.7
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 7.1e-110 401.7 437 50.3
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.1e-110 401.7 322 65.2
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 1.3e-108 397.5 437 49.4
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.9e-108 396.0 437 50.6
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.5e-107 394.0 592 42.9
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 1.9e-107 393.7 438 50.0
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 2.5e-107 393.3 437 49.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.3e-107 392.5 443 52.1
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 4.3e-107 392.5 438 51.1
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 7.3e-107 391.7 444 49.8
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 9.5e-107 391.3 440 50.9
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 2.1e-106 390.2 444 49.3
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 3.6e-106 389.4 446 48.2
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 6.2e-106 388.7 439 50.6
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.8e-105 387.1 416 53.8
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 6.8e-105 385.2 430 48.6
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.2e-104 384.4 453 48.3
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.0e-104 383.6 444 49.5
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 7.6e-104 381.7 453 47.7
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 7.6e-104 381.7 453 47.7
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 7.6e-104 381.7 430 47.9
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 9.9e-104 381.3 433 47.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 9.9e-104 381.3 438 49.1
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 3.7e-103 379.4 437 48.1
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.1e-102 377.9 443 49.2
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-102 377.5 438 48.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 1.4e-102 377.5 444 49.3
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.9e-102 377.1 439 49.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 2.4e-102 376.7 437 48.1
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.2e-101 374.4 460 47.2
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.1e-101 373.6 465 46.9
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 2.1e-101 373.6 437 47.6
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.7e-101 373.2 440 48.6
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 1.1e-99 367.9 303 63.7
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.5e-99 367.5 438 48.6
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 9.6e-99 364.8 495 43.2
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 2.1e-98 363.6 444 47.7
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.6e-98 362.8 443 48.1
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.4e-97 360.1 437 46.7
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 5.8e-96 355.5 441 46.9
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.3e-95 354.4 437 44.9
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 3.8e-95 352.8 353 54.4
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.1e-94 351.3 416 49.3
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.2e-94 349.7 442 44.8
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 3.5e-93 346.3 348 55.7
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 5.6e-91 339.0 462 43.1
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 1.8e-89 334.0 436 44.3
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.6e-88 330.1 382 49.7
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 3.4e-88 329.7 444 46.8
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.4e-88 329.3 447 45.4
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 2.1e-85 320.5 418 47.6
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.1e-82 310.5 414 44.4
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 2.1e-82 310.5 287 57.8
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 5.3e-81 305.8 452 41.6
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.5e-80 304.3 424 42.5
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 2.0e-80 303.9 223 77.6
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.0e-76 290.0 424 41.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.6e-75 285.0 611 33.7
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.0e-72 277.3 248 55.2
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 4.5e-72 276.2 430 37.9
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.0e-71 275.0 479 38.6
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.7e-71 274.2 350 46.9
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 3.8e-71 273.1 325 47.7
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.9e-62 244.2 300 47.3
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 4.2e-62 243.0 221 56.6
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 9.3e-62 241.9 254 52.4
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.7e-61 240.4 417 37.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 3.0e-60 236.9 306 46.1
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.6e-58 231.1 205 56.1
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.5e-56 224.6 438 35.8
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.8e-55 219.9 413 38.0
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 8.5e-55 218.8 417 35.5
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 6.3e-50 202.6 214 57.9
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.7e-42 177.9 206 43.7
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 7.0e-41 172.6 340 34.7
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 2.6e-40 170.6 204 43.1
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 2.6e-40 170.6 178 53.9
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 5.9e-40 169.5 160 55.0
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.2e-38 163.7 425 32.2
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 4.2e-38 163.3 447 30.2
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 5.0e-31 139.8 353 29.2
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.5e-30 138.3 388 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 1.4e-28 131.7 231 33.8
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 2.6e-27 127.5 99 60.6
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 5.7e-27 126.3 195 41.5
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.8e-26 124.0 101 57.4
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.7e-23 114.8 73 68.5
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.0e-23 113.2 443 27.1
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.9e-22 111.3 151 43.0
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.6e-21 108.2 150 40.0
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 2.1e-21 107.8 82 72.0
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 4.7e-21 106.7 112 55.4
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.0e-20 105.5 138 43.5
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 9.8e-19 99.0 74 70.3
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 3.5e-16 90.5 100 48.0
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 9.5e-14 82.4 66 68.2
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 3.2e-09 67.4 438 22.4
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 7.0e-09 66.2 78 34.6
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 9.2e-09 65.9 66 53.0
SMO118G0303 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 9.2e-09 65.9 258 27.5
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 8.6e-07 59.3 155 25.8
SMO222G0005 Selaginella moellendorffii HOM05D044143 ORTHO05D050877 8.6e-07 59.3 205 27.8
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.9e-06 58.2 43 65.1
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.5e-06 57.8 403 21.3


User provided reference genes

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