Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 5.1e-301 1036.9 525 100.0
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.6e-238 828.2 543 78.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.4e-234 816.2 546 78.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.4e-229 799.7 544 75.4
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.8e-211 738.4 549 68.5
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 4.9e-211 738.0 554 69.5
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 4.2e-210 734.9 552 69.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 9.3e-210 733.8 552 68.5
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 8.7e-208 727.2 548 70.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-207 726.9 552 68.3
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 7.4e-207 724.2 555 68.1
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.6e-206 723.0 552 69.7
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 6.2e-206 721.1 555 67.9
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.1e-205 720.3 556 67.4
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 4.0e-205 718.4 559 68.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 5.3e-205 718.0 551 67.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.9e-205 717.6 555 67.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 9.0e-205 717.2 553 68.5
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.8e-204 714.5 556 66.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.7e-203 713.0 536 69.2
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.9e-203 712.2 548 66.6
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.9e-203 712.2 558 67.6
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.9e-203 712.2 551 66.6
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.8e-203 711.8 559 67.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.4e-203 710.7 544 66.5
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-202 710.3 541 67.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-202 710.3 541 67.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.9e-202 709.5 548 67.9
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.5e-202 709.1 548 67.5
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.2e-202 708.8 544 66.5
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.0e-201 704.5 557 66.6
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.3e-199 698.7 545 67.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.3e-199 698.7 554 66.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.7e-199 698.0 554 65.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 3.7e-198 695.3 554 66.4
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.7e-198 695.3 560 64.8
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-197 693.3 550 66.2
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.4e-197 693.3 572 62.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-197 692.6 566 64.0
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-197 692.6 566 64.1
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 6.9e-197 691.0 566 63.8
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 6.9e-197 691.0 566 63.8
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 9.0e-197 690.6 560 65.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-196 690.3 553 66.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.6e-196 689.1 550 66.0
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-196 688.7 566 63.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.9e-196 688.0 543 65.6
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 7.6e-196 687.6 556 64.4
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.2e-195 686.0 562 62.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.8e-195 685.3 556 64.2
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 5.0e-195 684.9 566 63.1
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.0e-195 684.9 564 63.8
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 8.4e-195 684.1 541 65.8
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-194 682.9 547 65.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 7.2e-194 681.0 545 64.2
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 7.2e-194 681.0 567 62.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-193 679.9 530 66.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-193 679.5 566 62.0
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 4.6e-193 678.3 556 63.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.0e-192 677.2 566 62.5
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.0e-192 677.2 554 64.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.0e-192 675.6 566 62.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 6.7e-192 674.5 544 64.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.7e-192 674.1 488 69.7
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.9e-191 672.9 539 64.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 4.3e-191 671.8 561 62.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.7e-191 671.4 542 63.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.3e-190 667.9 579 61.7
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 8.2e-190 667.5 547 65.6
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.8e-189 666.4 544 64.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.9e-189 664.5 549 63.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.9e-189 664.5 498 69.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.6e-188 662.5 545 63.3
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.5e-188 661.8 545 63.3
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 5.9e-188 661.4 549 62.7
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 7.7e-188 661.0 536 62.9
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-187 659.8 545 63.5
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.4e-186 656.8 544 63.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 7.2e-186 654.4 436 76.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 2.7e-185 652.5 564 61.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 3.6e-185 652.1 573 60.2
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.8e-184 649.8 553 62.4
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.8e-184 649.8 553 62.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-184 649.0 536 64.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-182 643.3 555 60.9
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.7e-182 642.1 466 69.3
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 4.8e-182 641.7 540 63.0
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 8.2e-182 641.0 541 62.3
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 8.2e-182 641.0 541 62.3
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.1e-181 639.0 540 62.4
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 5.3e-181 638.3 546 61.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-180 635.6 562 59.6
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.9e-180 634.8 545 61.5
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.3e-179 633.6 522 63.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.8e-179 632.1 547 61.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.2e-178 629.0 402 76.4
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 5.5e-178 628.2 553 60.2
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 2.1e-177 626.3 543 61.0
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.0e-176 624.0 535 61.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.8e-174 615.9 528 60.8
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 4.1e-173 612.1 572 57.9
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 5.3e-173 611.7 440 71.6
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 3.2e-170 602.4 545 59.6
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.6e-169 600.1 455 66.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.1e-169 599.7 562 56.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 4.4e-167 592.0 557 58.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 8.2e-166 587.8 551 57.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 4.1e-165 585.5 553 59.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.3e-165 585.1 551 57.5
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 9.1e-165 584.3 402 70.4
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 2.7e-164 582.8 384 72.4
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.0e-163 580.9 551 58.8
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.5e-163 577.8 541 58.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.3e-160 569.7 553 57.1
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 7.0e-157 558.1 534 55.6
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 2.0e-156 556.6 550 57.1
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 3.5e-156 555.8 582 53.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-150 537.3 338 76.3
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 2.4e-149 533.1 542 54.6
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 4.3e-146 522.3 488 55.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.3e-146 522.3 511 58.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.1e-138 497.7 542 54.2
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.8e-137 493.0 550 51.6
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.9e-136 488.0 309 76.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 7.5e-127 458.4 442 49.3
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.1e-125 454.5 474 54.9
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.3e-104 382.5 377 48.0
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 9.9e-103 378.3 389 55.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 4.8e-97 359.4 500 46.2
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.7e-86 324.3 197 77.7
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.1e-85 321.6 316 58.9
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.9e-85 320.9 369 48.5
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.3e-81 308.1 206 71.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.4e-80 303.9 358 49.7
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-77 294.7 268 57.8
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.1e-68 262.7 155 82.6
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 7.7e-55 219.2 198 56.6
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.9e-46 190.7 257 49.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.3e-43 181.0 209 54.5
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.0e-43 180.6 172 57.6
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.5e-37 161.0 278 41.7
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.5e-31 140.6 472 26.7
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 5.0e-30 136.7 91 69.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.3e-29 133.7 91 68.1
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.1e-20 104.8 79 63.3
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-18 97.8 69 65.2
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.8e-18 96.7 180 31.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 7.5e-18 96.3 69 63.8
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 9.8e-18 95.9 69 63.8
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 9.8e-18 95.9 115 47.8
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.4e-16 90.1 152 39.5
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 3.3e-13 80.9 58 67.2
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.8e-12 77.8 124 42.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 8.1e-12 76.3 73 53.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-10 71.6 88 44.3
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.5e-07 60.8 72 44.4


User provided reference genes

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