Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 2.4e-78 295.4 150 100.0
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 1.3e-44 183.3 146 68.5
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 3.4e-40 168.7 146 64.4
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 4.9e-39 164.9 146 63.7
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 3.8e-23 112.1 105 56.2
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 1.2e-21 107.1 113 46.9
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 6.0e-21 104.8 101 57.4
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 2.3e-20 102.8 96 55.2
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 6.7e-20 101.3 130 43.8
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 8.7e-20 100.9 107 49.5
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 8.7e-20 100.9 107 49.5
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 8.7e-20 100.9 116 49.1
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.5e-19 99.4 107 48.6
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 2.5e-19 99.4 108 50.9
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 3.3e-19 99.0 112 51.8
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 9.7e-19 97.4 142 43.0
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 9.7e-19 97.4 135 44.4
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 1.6e-18 96.7 117 49.6
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 3.7e-18 95.5 108 51.9
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 4.8e-18 95.1 98 54.1
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 6.3e-18 94.7 96 52.1
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 6.3e-18 94.7 96 52.1
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 8.2e-18 94.4 109 50.5
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 1.1e-17 94.0 95 47.4
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 1.1e-17 94.0 110 51.8
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 1.4e-17 93.6 106 51.9
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 1.4e-17 93.6 98 52.0
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 2.4e-17 92.8 95 51.6
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 4.1e-17 92.0 98 55.1
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 1.5e-16 90.1 137 38.7
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 1.5e-16 90.1 97 51.5
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 2.0e-16 89.7 88 52.3
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 4.5e-16 88.6 140 35.7
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 5.9e-16 88.2 108 46.3
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 5.9e-16 88.2 112 46.4
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.0e-15 87.4 138 39.9
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 2.2e-15 86.3 91 51.6
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 2.9e-15 85.9 107 46.7
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 2.9e-15 85.9 89 55.1
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 5.0e-15 85.1 94 48.9
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 6.5e-15 84.7 91 56.0
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 4.2e-14 82.0 104 46.2
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 5.5e-14 81.6 89 47.2
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 7.2e-14 81.3 95 44.2
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 7.2e-14 81.3 109 45.9
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 2.1e-13 79.7 88 50.0
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.1e-13 79.7 96 43.8
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 3.6e-13 79.0 111 41.4
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.0e-12 77.4 111 40.5
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 1.0e-12 77.4 133 34.6
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 1.4e-12 77.0 98 38.8
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 1.4e-12 77.0 106 46.2
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 2.3e-12 76.3 125 41.6
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 2.3e-12 76.3 108 38.0
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 3.0e-12 75.9 97 40.2
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 8.8e-12 74.3 100 41.0
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 8.8e-12 74.3 100 41.0
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 4.3e-11 72.0 103 41.7
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 3.7e-10 68.9 136 33.8
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 8.2e-10 67.8 102 41.2
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 8.2e-10 67.8 101 40.6
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 1.1e-09 67.4 96 42.7
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 1.1e-09 67.4 96 42.7
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 1.8e-09 66.6 101 41.6
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 2.4e-09 66.2 100 40.0
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 2.4e-09 66.2 100 40.0
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 5.3e-09 65.1 98 41.8
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 5.3e-09 65.1 90 42.2
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 9.1e-09 64.3 96 40.6
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 2.0e-08 63.2 99 41.4
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 2.6e-08 62.8 113 38.9
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 5.9e-08 61.6 96 38.5
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 5.9e-08 61.6 94 41.5
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 1.0e-07 60.8 98 37.8
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 1.3e-07 60.5 109 37.6
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 2.2e-07 59.7 95 41.1
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 3.8e-07 58.9 93 41.9
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 1.1e-06 57.4 101 38.6
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 1.1e-06 57.4 131 35.1
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 9.4e-06 54.3 88 42.0


User provided reference genes

Program Settings