Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 5.2e-123 444.5 243 100.0
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 1.4e-64 250.4 273 57.5
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 1.2e-39 167.5 274 46.4
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 3.6e-23 112.8 229 38.0
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 1.2e-21 107.8 125 45.6
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.5e-21 107.5 120 49.2
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.0e-21 107.1 224 36.6
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 2.0e-21 107.1 222 36.0
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 2.6e-21 106.7 224 36.6
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 3.7e-20 102.8 219 37.0
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 6.3e-20 102.1 154 39.0
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 1.4e-19 100.9 189 40.2
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.8e-19 100.5 249 32.5
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.8e-19 100.5 216 36.1
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 4.1e-19 99.4 180 37.8
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 2.0e-18 97.1 261 33.3
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.5e-18 96.3 214 33.2
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 1.7e-17 94.0 134 40.3
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 1.7e-17 94.0 125 44.8
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 1.7e-17 94.0 218 34.4
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.7e-17 94.0 247 32.0
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 2.9e-17 93.2 183 39.3
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 3.9e-17 92.8 190 37.4
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 6.6e-17 92.0 178 33.7
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 1.1e-16 91.3 242 36.8
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 1.5e-16 90.9 234 36.3
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.3e-16 89.7 219 32.4
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 5.6e-16 89.0 223 35.4
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 7.3e-16 88.6 138 37.7
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 1.2e-15 87.8 184 38.0
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 1.2e-15 87.8 263 28.9
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 1.6e-15 87.4 301 30.9
MELO3C000744.2 Cucumis melo HOM05D008171 ORTHO05D006541 3.6e-15 86.3 181 43.6
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 4.7e-15 85.9 91 51.6
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 8.0e-15 85.1 202 35.1
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.4e-14 84.3 228 35.1
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 6.8e-14 82.0 175 32.6
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 8.9e-14 81.6 175 32.6
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 2.0e-13 80.5 242 32.6
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 9.8e-13 78.2 174 33.9
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 1.3e-12 77.8 128 39.8
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 2.2e-12 77.0 244 27.5
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 2.9e-12 76.6 270 31.9
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 2.9e-12 76.6 175 31.4
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 3.7e-12 76.3 272 33.5
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 3.7e-12 76.3 240 30.8
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 4.9e-12 75.9 139 36.7
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 8.3e-12 75.1 204 32.4
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 1.1e-11 74.7 80 43.8
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 1.4e-11 74.3 191 33.0
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 1.9e-11 73.9 215 31.2
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 2.4e-11 73.6 100 41.0
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 2.4e-11 73.6 240 30.8
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 5.4e-11 72.4 228 29.4
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 7.0e-11 72.0 130 36.9
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 7.0e-11 72.0 123 39.0
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 1.6e-10 70.9 225 28.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.6e-10 70.9 225 28.9
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 1.6e-10 70.9 92 41.3
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 3.5e-10 69.7 240 29.6
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 3.5e-10 69.7 211 31.8
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 3.5e-10 69.7 203 29.6
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 3.5e-10 69.7 232 28.9
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 4.6e-10 69.3 233 29.6
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 4.6e-10 69.3 112 38.4
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 4.6e-10 69.3 238 30.7
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 7.8e-10 68.6 143 35.0
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 7.8e-10 68.6 101 39.6
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 1.0e-09 68.2 231 30.3
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 1.0e-09 68.2 100 40.0
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 1.3e-09 67.8 222 29.3
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 2.3e-09 67.0 239 29.7
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 3.0e-09 66.6 213 28.6
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 3.0e-09 66.6 237 27.4
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 3.9e-09 66.2 242 31.0
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 5.0e-09 65.9 249 28.9
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 6.6e-09 65.5 136 33.8
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 6.6e-09 65.5 74 40.5
Medtr5g008380 Medicago truncatula HOM05D008729 ORTHO05D006541 1.9e-08 63.9 210 32.9
Lsat_1_v5_gn_3_88160 Lactuca sativa HOM05D021654 ORTHO05D020576 2.5e-08 63.5 114 36.0
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 2.5e-08 63.5 152 32.2
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 5.6e-08 62.4 239 28.9
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 5.6e-08 62.4 62 48.4
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 5.6e-08 62.4 149 31.5
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 7.3e-08 62.0 159 29.6
Glyma.09G242100 Glycine max HOM05D008729 ORTHO05D006541 9.5e-08 61.6 131 38.2
unitig_21.g20743 Utricularia gibba HOM05D050672 ORTHO05D006541 9.5e-08 61.6 209 30.6
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 2.8e-07 60.1 80 41.2
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 2.8e-07 60.1 257 28.8
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 3.6e-07 59.7 126 34.1
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 3.6e-07 59.7 217 30.0
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 4.7e-07 59.3 240 28.3
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 6.2e-07 58.9 250 26.4
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 1.1e-06 58.2 240 28.8
Actinidia32333 Actinidia chinensis HOM05D008171 ORTHO05D006541 2.3e-06 57.0 81 38.3
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 4.0e-06 56.2 215 27.4


User provided reference genes

Program Settings