Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1593.9 783 100.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 0.0e+00 1361.7 783 86.1
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1344.3 783 84.4
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1243.0 769 80.8
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 787 66.5
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 2.8e-303 1045.0 787 66.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 4.8e-303 1044.3 788 66.4
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.1e-302 1043.1 788 65.7
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.4e-302 1042.7 787 66.2
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 6.9e-302 1040.4 790 65.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.1e-298 1028.9 786 66.4
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.4e-297 1026.2 785 66.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 2.0e-296 1022.3 782 66.1
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 4.3e-296 1021.1 781 65.7
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 5.7e-296 1020.8 780 65.1
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.7e-296 1020.8 780 65.1
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.7e-295 1018.1 780 65.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 774 65.6
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 785 65.6
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.6e-293 1011.9 781 65.0
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 5.0e-292 1007.7 776 64.4
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 786 64.2
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 786 65.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.4e-291 1006.1 783 65.3
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-288 996.5 782 63.9
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 9.7e-288 993.4 788 63.3
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 9.7e-288 993.4 787 64.3
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.8e-287 991.1 798 63.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.0e-284 983.4 767 64.0
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.7e-284 982.6 789 63.2
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 2.9e-284 981.9 779 63.9
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 6.5e-284 980.7 780 63.7
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-283 979.9 782 62.8
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.2e-283 978.4 780 63.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-283 978.0 773 63.5
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.6e-282 976.1 758 65.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 3.6e-282 974.9 787 63.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.0e-281 971.5 791 63.1
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 5.2e-281 971.1 789 62.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.5e-280 969.5 796 62.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 4.4e-280 968.0 812 61.9
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.4e-278 962.2 763 63.4
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 9.1e-278 960.3 780 63.1
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 5.9e-277 957.6 775 62.6
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 7.7e-277 957.2 777 62.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 6.5e-276 954.1 784 61.9
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 3.2e-275 951.8 777 61.4
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 9.4e-275 950.3 791 61.2
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.6e-274 949.5 777 62.4
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.1e-274 949.1 782 62.1
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.7e-274 948.7 776 61.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 4.7e-274 948.0 778 62.5
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 8.0e-274 947.2 820 60.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.4e-273 946.4 770 61.3
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.0e-273 945.3 773 62.0
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 3.0e-273 945.3 776 61.9
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 3.4e-272 941.8 781 62.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 7.5e-272 940.6 776 61.6
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 8.3e-271 937.2 775 62.8
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.8e-270 936.0 778 61.7
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.1e-270 934.9 778 62.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.7e-269 932.2 779 61.9
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.5e-269 931.4 774 62.5
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 5.9e-269 931.0 782 61.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.3e-268 929.9 777 61.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 3.8e-268 928.3 774 60.2
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 6.5e-268 927.5 782 61.9
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.5e-267 926.4 764 61.1
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.5e-267 925.6 777 62.3
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.2e-267 925.2 785 61.4
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.2e-267 925.2 789 61.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 9.4e-267 923.7 788 59.8
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.6e-266 922.9 779 61.2
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.7e-266 922.2 777 62.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.7e-266 921.4 780 61.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.0e-265 920.2 780 61.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 4.0e-265 918.3 783 60.8
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.2e-265 917.9 779 60.6
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.8e-265 917.1 779 61.0
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.0e-264 916.0 782 61.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.8e-263 912.1 783 60.3
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 8.3e-263 910.6 778 59.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.7e-261 904.0 779 61.5
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.0e-260 903.7 785 59.2
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 8.6e-260 900.6 781 60.2
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-259 899.8 781 60.1
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-258 896.7 780 61.2
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.7e-258 894.8 804 58.0
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.1e-258 894.4 781 60.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 6.4e-255 884.4 782 58.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.2e-253 880.2 769 59.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 8.6e-252 874.0 778 57.7
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.6e-252 874.0 776 57.6
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.5e-251 872.5 776 58.5
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 5.6e-251 871.3 782 58.7
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 7.3e-251 870.9 781 58.5
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 9.5e-251 870.5 781 57.6
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.6e-250 869.8 781 58.5
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 2.1e-250 869.4 780 58.2
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.8e-250 869.0 777 58.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 6.2e-250 867.8 781 58.8
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.0e-249 867.1 800 57.6
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.4e-249 866.7 779 57.3
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.8e-249 866.3 777 57.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.2e-249 864.8 781 57.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.5e-248 863.2 784 57.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-247 860.1 779 59.3
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.2e-247 859.4 767 58.3
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.2e-247 859.4 776 57.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 8.3e-247 857.4 773 57.4
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.4e-246 856.7 783 57.2
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.2e-246 855.5 749 60.6
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.4e-246 854.7 779 58.2
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 5.4e-246 854.7 774 57.6
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 3.3e-243 845.5 742 59.3
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.3e-243 845.1 778 56.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 8.1e-242 840.9 777 56.9
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.1e-238 827.8 765 56.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 9.2e-238 827.4 797 55.8
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.3e-236 823.5 786 54.8
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.3e-231 807.0 786 53.3
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.4e-231 804.7 773 55.0
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 9.2e-230 800.8 783 53.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.1e-229 799.7 777 54.6
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 3.0e-228 795.8 735 58.2
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.6e-226 790.0 771 54.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.4e-222 776.2 864 51.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-221 773.5 781 52.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 8.7e-220 767.7 790 54.4
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.9e-219 766.5 726 55.9
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.3e-219 764.6 770 54.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.8e-218 762.7 775 54.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.4e-217 760.4 779 52.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.3e-212 743.0 780 52.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 6.7e-212 741.5 736 54.6
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.6e-205 718.8 737 52.8
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 3.3e-195 686.0 711 53.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.3e-186 657.5 691 52.5
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 5.1e-180 635.6 777 45.7
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 5.3e-177 625.5 737 45.5
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 3.2e-166 589.7 802 42.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.6e-165 586.3 736 43.6
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.2e-157 561.2 773 42.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.2e-155 554.7 763 42.2
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-153 546.2 400 68.8
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-153 546.2 400 68.8
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.9e-151 540.0 448 61.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.9e-151 540.0 754 41.5
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.0e-139 500.7 421 63.4
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.9e-134 484.2 407 59.7
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.6e-131 473.8 575 45.0
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.6e-115 420.6 262 74.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.1e-113 413.3 465 51.2
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.3e-102 375.9 254 69.7
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.4e-99 367.1 469 43.1
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 8.7e-95 352.4 756 34.0
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 4.5e-67 260.4 755 28.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.7e-63 246.5 279 47.3
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.7e-56 224.6 288 47.6
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 3.1e-52 211.1 195 54.9
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.4e-38 164.1 153 56.2
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.4e-38 164.1 83 85.5
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 8.3e-29 133.3 150 48.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.1e-28 131.0 76 78.9
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.8e-22 110.5 170 38.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.2e-20 104.8 140 38.6
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.1e-11 75.5 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.1e-09 69.7 46 69.6
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 6.2e-08 63.9 39 69.2


User provided reference genes

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