Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.0e-291 1005.0 496 100.0
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.4e-247 859.4 500 85.8
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 3.4e-246 854.7 497 84.1
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 3.8e-245 851.3 526 82.5
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 6.7e-242 840.5 498 85.3
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 5.5e-220 767.7 496 77.6
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 6.7e-218 760.8 494 74.9
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 3.3e-217 758.4 494 74.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.7e-217 757.7 499 75.6
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.4e-215 753.1 494 73.9
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.0e-214 749.2 494 75.1
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 3.4e-214 748.4 454 80.6
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 4.5e-214 748.0 483 75.6
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.8e-213 745.0 470 76.8
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 3.8e-213 745.0 494 73.9
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 4.7e-211 738.0 494 73.7
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 7.9e-211 737.3 462 77.5
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.4e-210 736.5 494 74.7
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.8e-210 736.1 494 73.3
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 6.7e-210 734.2 484 74.2
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 8.8e-210 733.8 540 70.0
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 2.2e-208 729.2 498 74.9
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 3.7e-208 728.4 425 81.4
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 3.1e-207 725.3 429 80.4
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 5.3e-207 724.5 496 73.4
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 7.0e-207 724.2 460 75.4
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 9.1e-207 723.8 455 75.6
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.2e-206 723.4 494 72.3
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 2.6e-206 722.2 433 79.2
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 2.6e-206 722.2 424 80.4
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.5e-206 721.8 438 77.9
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 7.7e-206 720.7 424 80.9
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 7.7e-206 720.7 424 80.4
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.0e-205 720.3 499 73.9
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.0e-205 720.3 498 73.3
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 2.2e-205 719.2 487 72.9
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.2e-205 719.2 496 72.8
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 5.0e-205 718.0 500 72.0
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.0e-205 718.0 494 71.7
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 8.5e-205 717.2 454 75.1
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.1e-204 716.8 454 75.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.1e-204 716.8 494 71.9
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.5e-204 715.7 424 80.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 3.2e-204 715.3 483 72.3
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 4.2e-204 714.9 497 72.4
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.5e-204 714.5 462 75.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 5.5e-204 714.5 486 71.6
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 2.7e-203 712.2 486 71.6
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 3.6e-203 711.8 486 71.6
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 3.6e-203 711.8 459 73.9
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.4e-202 709.9 428 77.8
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.4e-202 709.9 484 72.9
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 4.0e-202 708.4 426 79.1
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 6.7e-202 707.6 523 67.5
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 8.8e-202 707.2 426 79.1
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.1e-201 706.8 431 78.7
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.5e-201 706.4 494 70.9
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.3e-201 705.3 495 71.9
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.7e-200 703.0 498 70.7
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.8e-200 702.2 497 70.2
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 6.3e-200 701.0 464 73.1
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.4e-199 699.9 441 75.3
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.8e-199 699.5 425 77.6
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 7.0e-199 697.6 504 70.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.7e-198 695.7 423 77.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 4.5e-198 694.9 499 69.5
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 5.0e-197 691.4 494 67.8
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 5.0e-197 691.4 495 67.7
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.5e-196 689.9 494 68.4
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 5.5e-196 688.0 494 68.4
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 2.1e-195 686.0 435 75.6
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 2.7e-195 685.6 440 74.8
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.8e-194 682.9 403 80.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 2.3e-194 682.6 455 74.3
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 5.2e-194 681.4 494 66.6
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 6.8e-194 681.0 444 74.5
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.2e-193 680.2 494 67.6
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.5e-193 679.9 494 66.6
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.4e-193 678.7 494 66.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.4e-193 678.7 494 66.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.7e-192 676.4 494 66.4
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 2.4e-191 672.5 439 74.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 5.4e-191 671.4 494 66.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 5.4e-191 671.4 494 66.6
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 7.7e-190 667.5 436 74.1
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.0e-189 667.2 402 77.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 8.5e-189 664.1 404 77.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.2e-188 662.1 482 68.5
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 7.2e-188 661.0 427 74.0
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 5.7e-185 651.4 498 66.5
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.7e-184 648.7 377 82.0
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.8e-183 646.4 473 70.2
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.8e-181 638.6 470 66.6
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 5.7e-177 624.8 443 69.1
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 9.2e-175 617.5 377 76.9
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 3.3e-172 609.0 494 65.2
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.8e-171 605.9 410 70.7
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 2.0e-169 599.7 470 62.3
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 7.0e-167 591.3 423 66.9
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.6e-166 590.1 393 72.8
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 3.9e-165 585.5 440 66.4
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 3.6e-163 578.9 485 61.4
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 3.6e-163 578.9 390 71.5
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 6.2e-163 578.2 340 79.7
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.9e-160 568.5 377 72.9
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 8.3e-160 567.8 441 60.5
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.0e-157 560.8 409 66.0
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.7e-150 536.2 405 65.2
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 5.1e-149 531.9 381 68.8
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 8.1e-147 524.6 462 56.9
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 7.1e-143 511.5 460 55.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 4.6e-142 508.8 327 75.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.5e-121 440.7 256 80.9
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 5.0e-112 409.1 391 52.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 7.9e-110 401.7 296 65.5
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 7.9e-110 401.7 296 65.5
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.3e-109 401.0 349 59.3
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 8.8e-101 371.7 299 61.9
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.3e-99 367.9 291 62.9
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-97 361.3 315 58.7
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 4.2e-95 352.8 284 61.3
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 3.6e-94 349.7 265 64.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.1e-90 336.7 384 46.1
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.9e-79 300.8 207 70.0
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 4.0e-77 293.1 336 44.3
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.0e-77 293.1 245 65.7
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.4e-69 268.1 250 57.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 5.2e-69 266.2 581 32.7
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.2e-49 201.8 461 33.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 8.1e-46 189.1 111 80.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.7e-40 171.4 109 71.6
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 2.1e-38 164.5 111 74.8
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 3.0e-32 144.1 90 77.8
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.8e-28 129.8 82 70.7
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.5e-20 105.1 58 72.4
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 5.8e-20 103.2 69 73.9
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.9e-18 98.2 69 63.8
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.9e-18 98.2 69 63.8
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 2.4e-18 97.8 69 65.2
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 3.2e-18 97.4 68 66.2
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 3.2e-18 97.4 69 65.2
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.2e-17 95.5 70 62.9
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.6e-17 95.1 92 52.2
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.1e-17 94.7 69 62.3
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.7e-17 94.4 68 63.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 3.5e-17 94.0 69 62.3
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.6e-17 93.6 69 63.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 4.6e-17 93.6 53 77.4
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.7e-14 84.0 69 63.8
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.7e-11 75.1 87 48.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 2.4e-10 71.2 49 75.5
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 7.4e-07 59.7 46 65.2


User provided reference genes

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