Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.0e-155 552.4 271 100.0
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.4e-129 466.5 266 88.7
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 5.1e-127 458.0 266 88.0
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.5e-123 446.4 280 82.5
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.5e-105 386.0 239 79.5
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.5e-105 386.0 245 78.4
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.1e-104 382.9 232 81.5
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.5e-102 375.9 231 80.1
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.3e-102 375.6 259 73.0
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 3.3e-102 375.6 231 79.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 7.4e-102 374.4 237 78.5
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 4.8e-101 371.7 231 79.2
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 4.8e-101 371.7 231 78.8
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 8.2e-101 370.9 254 72.8
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 8.2e-101 370.9 231 78.4
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.8e-100 369.8 235 77.9
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.4e-100 369.4 231 77.9
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.1e-100 369.0 231 78.8
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 4.1e-100 368.6 234 77.8
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 9.0e-100 367.5 230 79.1
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.2e-99 367.1 231 77.9
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.2e-99 367.1 231 77.9
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.2e-99 367.1 239 76.6
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 2.0e-99 366.3 230 77.4
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 5.9e-99 364.8 233 77.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.0e-98 364.0 221 78.3
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 1.0e-98 364.0 244 75.0
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.7e-98 363.2 228 78.9
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 8.5e-98 360.9 223 77.6
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 8.5e-98 360.9 232 78.0
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.1e-97 360.5 232 76.3
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.4e-97 360.1 248 73.0
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.4e-97 360.1 248 73.0
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.9e-97 359.8 268 69.4
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.9e-97 359.8 231 74.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.9e-97 359.8 237 74.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 3.2e-97 359.0 240 73.8
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 3.2e-97 359.0 222 78.8
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 5.5e-97 358.2 224 79.0
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 5.5e-97 358.2 227 77.5
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 5.5e-97 358.2 238 73.9
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 7.2e-97 357.8 215 79.5
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 9.3e-97 357.5 231 76.6
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.6e-96 356.7 242 73.1
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.1e-96 356.3 247 72.5
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.1e-96 356.3 252 70.6
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.7e-96 355.9 237 75.5
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.6e-96 355.5 239 73.6
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.6e-96 355.1 239 74.5
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 4.6e-96 355.1 229 77.3
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 6.1e-96 354.8 241 74.7
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 7.9e-96 354.4 241 73.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 5.1e-95 351.7 239 73.6
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.7e-95 351.3 238 73.5
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 6.7e-95 351.3 292 64.4
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 8.8e-95 350.9 258 70.5
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 8.8e-95 350.9 250 71.2
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 8.8e-95 350.9 232 73.7
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.5e-94 350.1 216 79.2
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.9e-94 349.7 231 74.5
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.5e-94 349.4 256 69.1
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 2.5e-94 349.4 239 73.6
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 3.3e-94 349.0 235 74.9
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.3e-94 349.0 210 81.4
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 7.4e-94 347.8 231 76.6
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 7.4e-94 347.8 231 74.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.3e-93 347.1 231 74.0
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.7e-93 346.7 235 74.0
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.2e-93 346.3 217 76.0
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 4.8e-93 345.1 269 67.3
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 4.8e-93 345.1 235 74.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.4e-92 343.6 217 77.9
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 6.9e-92 341.3 234 70.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.2e-91 340.5 217 77.0
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.0e-91 339.7 202 79.7
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.0e-91 339.7 240 71.7
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 3.4e-91 339.0 223 73.1
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 3.4e-91 339.0 257 68.9
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 7.7e-91 337.8 210 77.6
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 2.9e-90 335.9 218 77.5
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 6.5e-90 334.7 229 72.5
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 8.5e-90 334.3 217 74.7
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.1e-89 334.0 220 76.4
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.4e-89 333.6 226 73.5
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.9e-89 333.2 265 66.4
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.9e-89 333.2 265 66.4
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 7.9e-88 327.8 245 69.0
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 2.3e-87 326.2 225 71.6
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 6.7e-87 324.7 244 67.6
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 2.6e-86 322.8 253 66.0
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.7e-82 310.1 214 74.3
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 5.0e-82 308.5 190 77.4
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 3.7e-77 292.4 229 62.4
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 2.2e-74 283.1 217 64.1
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 7.2e-73 278.1 217 61.8
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.2e-72 277.3 247 61.5
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.0e-67 260.0 214 59.3
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 2.1e-64 250.0 220 55.5
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.2e-62 244.2 149 81.9
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.6e-62 243.0 151 76.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 9.8e-62 241.1 147 78.9
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 3.5e-59 232.6 162 69.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.3e-58 230.7 181 66.3
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.1e-57 227.6 221 53.4
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.5e-57 225.3 151 72.8
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 9.5e-57 224.6 149 73.8
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 8.0e-56 221.5 149 72.5
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 5.0e-50 202.2 150 66.0
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.9e-49 200.3 114 83.3
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.5e-49 199.9 135 73.3
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.4e-47 194.1 121 77.7
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.0e-47 193.0 237 50.2
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 4.0e-47 192.6 139 68.3
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.4e-44 184.1 210 51.0
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 4.6e-43 179.1 121 71.9
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.1e-39 166.4 233 44.6
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 8.9e-39 164.9 174 55.2
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 7.5e-38 161.8 196 46.4
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 2.1e-32 143.7 158 48.1
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 6.4e-29 132.1 244 36.1
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.6e-27 127.5 85 74.1
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.9e-25 120.6 117 58.1
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 7.6e-22 108.6 82 64.6
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 3.2e-20 103.2 56 82.1
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 4.3e-17 92.8 162 38.9
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 5.3e-15 85.9 45 88.9
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 6.9e-15 85.5 57 71.9
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.2e-14 84.7 81 56.8
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.0e-14 84.0 68 66.2
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 9.9e-14 81.6 56 73.2
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.2e-11 74.7 52 71.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 2.7e-11 73.6 67 58.2
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.9e-09 67.4 44 72.7
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 2.8e-08 63.5 42 71.4


User provided reference genes

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