Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 4.9e-304 1047.0 520 100.0
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 2.7e-238 828.6 469 90.6
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 4.5e-233 811.2 468 88.5
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 7.6e-204 714.1 470 78.9
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 2.2e-203 712.6 469 77.6
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 1.1e-199 700.3 469 77.8
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 8.7e-168 594.3 445 67.9
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 1.3e-166 590.5 442 67.9
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 3.7e-166 589.0 439 68.6
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 6.9e-165 584.7 441 66.2
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 6.9e-165 584.7 454 68.3
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 9.0e-165 584.3 445 66.7
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 1.1e-162 577.4 443 65.7
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 1.4e-162 577.0 449 67.0
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 2.5e-162 576.2 443 67.5
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 4.2e-162 575.5 470 64.3
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 1.6e-161 573.5 470 64.0
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 3.5e-161 572.4 442 67.4
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 6.1e-161 571.6 408 70.1
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 7.9e-161 571.2 448 65.8
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 1.3e-160 570.5 443 65.9
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 1.8e-160 570.1 445 66.1
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 2.3e-160 569.7 444 65.8
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 2.3e-160 569.7 443 65.0
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 1.5e-159 567.0 456 66.4
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 1.5e-159 567.0 445 64.7
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 1.9e-159 566.6 446 64.6
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 9.7e-159 564.3 526 56.8
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 4.1e-157 558.9 459 64.1
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 1.0e-155 554.3 447 64.9
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 1.9e-154 550.1 486 61.3
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 3.2e-154 549.3 445 64.0
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 3.2e-154 549.3 445 64.0
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 3.2e-154 549.3 445 64.0
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 3.2e-154 549.3 462 62.8
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 5.5e-154 548.5 446 62.8
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 9.4e-154 547.7 441 64.2
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 1.6e-153 547.0 457 63.2
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 3.6e-153 545.8 458 62.4
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 1.4e-152 543.9 460 62.2
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 2.3e-152 543.1 452 62.8
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 3.0e-152 542.7 441 61.9
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 3.0e-152 542.7 508 58.7
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 3.0e-152 542.7 451 60.8
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 3.0e-152 542.7 439 61.5
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 5.1e-152 542.0 433 64.7
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.1e-151 540.8 409 67.2
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 2.0e-151 540.0 444 61.9
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 3.3e-151 539.3 441 61.7
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 7.4e-151 538.1 444 61.9
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 1.3e-150 537.3 445 64.0
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 2.8e-150 536.2 483 59.2
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 4.8e-150 535.4 444 61.7
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 3.1e-149 532.7 452 62.6
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 1.2e-148 530.8 443 62.3
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 4.5e-148 528.9 449 61.5
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 1.3e-147 527.3 461 60.7
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 2.9e-147 526.2 452 62.4
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 2.9e-147 526.2 549 53.6
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 2.5e-146 523.1 441 60.8
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 2.5e-146 523.1 467 58.7
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 1.6e-145 520.4 439 57.6
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 2.1e-145 520.0 451 56.8
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 2.3e-144 516.5 452 60.0
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 5.1e-144 515.4 568 50.7
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 6.7e-144 515.0 683 44.9
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 8.8e-144 514.6 452 59.5
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 2.6e-143 513.1 441 61.5
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 5.7e-143 511.9 452 56.4
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 7.4e-143 511.5 419 62.8
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 8.2e-142 508.1 442 57.0
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 2.4e-141 506.5 439 57.2
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 7.0e-141 505.0 438 61.2
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 1.5e-140 503.8 446 58.5
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 2.0e-140 503.4 439 57.6
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 2.0e-140 503.4 439 57.2
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 4.5e-140 502.3 439 57.4
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 4.5e-140 502.3 450 60.0
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 1.0e-139 501.1 426 61.3
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 1.3e-139 500.7 442 57.2
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 1.1e-138 497.7 449 57.0
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 4.2e-138 495.7 372 68.5
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 3.6e-137 492.7 447 60.9
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 8.0e-137 491.5 584 47.6
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 1.5e-135 487.3 442 60.0
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 7.5e-135 485.0 440 59.5
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 2.2e-134 483.4 481 52.6
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 4.8e-134 482.3 478 52.3
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 1.2e-129 467.6 362 66.6
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 7.5e-119 431.8 462 50.2
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 2.3e-115 420.2 354 61.0
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 6.6e-115 418.7 351 61.5
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 4.9e-110 402.5 416 51.4
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 6.6e-107 392.1 382 56.3
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 4.0e-96 356.3 428 43.7
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 2.0e-95 354.0 422 42.4
HPP92_015784 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.2e-92 344.7 420 47.4
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 1.6e-92 344.4 458 42.1
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 1.3e-86 324.7 282 60.6
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 3.1e-80 303.5 401 45.4
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 2.4e-77 293.9 421 41.1
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 5.4e-77 292.7 264 55.7
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 2.6e-63 247.3 162 73.5
HPP92_015795 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.6e-60 238.0 271 48.3
HPP92_015817 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.1e-57 227.6 291 44.0
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 1.0e-54 218.8 496 30.6
QL01p000012 Quercus lobata HOM05D005244 ORTHO05D006539 1.6e-52 211.5 221 53.8
HPP92_015815 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.7e-52 210.7 164 62.2
CBR_g22899 Chara braunii HOM05D005244 ORTHO05D006539 5.3e-48 196.4 495 30.3
HPP92_015814 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.5e-47 194.9 253 44.7
SalBow7G2907 Salvia bowleyana HOM05D005244 ORTHO05D006539 2.7e-44 184.1 123 70.7
SalBow8G4401 Salvia bowleyana HOM05D005244 ORTHO05D006539 3.0e-43 180.6 123 69.1
Zm00001eb270590 Zea mays HOM05D005244 ORTHO05D006539 8.7e-43 179.1 147 60.5
Zm00001eb016210 Zea mays HOM05D005244 ORTHO05D006539 3.3e-42 177.2 124 66.1
Zm00001eb175510 Zea mays HOM05D005244 ORTHO05D006539 9.7e-42 175.6 120 68.3
SalBow2G0201 Salvia bowleyana HOM05D005244 ORTHO05D006539 6.3e-41 172.9 130 65.4
MBI16_g00817_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 8.2e-41 172.6 257 43.6
Zm00001eb357680 Zea mays HOM05D005244 ORTHO05D006539 3.1e-40 170.6 119 67.2
SalBow6G0925 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.7e-38 164.9 159 54.1
HPP92_015816 Vanilla planifolia HOM05D005244 ORTHO05D006539 6.9e-32 142.9 85 71.8
Zm00001eb035880 Zea mays HOM05D005244 ORTHO05D006539 2.5e-29 134.4 90 66.7
HPP92_015796 Vanilla planifolia HOM05D005244 ORTHO05D006539 5.5e-29 133.3 164 47.0
Cre16.g680450 Chlamydomonas reinhardtii HOM05D005244 ORTHO05D006539 3.6e-28 130.6 451 27.5
HanXRQChr14g0448901 Helianthus annuus HOM05D005244 ORTHO05D006539 5.7e-26 123.2 100 57.0
MCO06G232 Micromonas commoda HOM05D005244 ORTHO05D006539 4.8e-25 120.2 403 25.3
Zm00001eb063080 Zea mays HOM05D005244 ORTHO05D006539 9.1e-24 115.9 86 64.0
CARHR271920 Cardamine hirsuta HOM05D005244 ORTHO05D006539 2.5e-21 107.8 63 81.0
SHI03161 Sapria himalayana HOM05D005244 ORTHO05D006539 3.3e-18 97.4 85 60.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 5.9e-15 86.7 74 60.8
MBI16_g00818_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 3.2e-13 80.9 97 50.5
MELO3C028251.2 Cucumis melo HOM05D005244 ORTHO05D006539 2.9e-06 57.8 60 53.3


User provided reference genes

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