Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.9e-55 218.4 114 100.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 3.3e-51 204.9 114 93.9
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 8.0e-50 200.3 114 91.2
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 8.3e-47 190.3 113 87.6
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 8.3e-47 190.3 112 84.8
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 8.3e-47 190.3 112 84.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.4e-46 189.5 114 85.1
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.2e-46 188.3 112 83.9
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.1e-46 188.0 112 83.9
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.6e-45 186.0 112 83.9
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 4.6e-45 184.5 112 82.1
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.0e-45 184.1 112 82.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 6.0e-45 184.1 112 83.0
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.8e-45 183.7 112 82.1
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.0e-44 183.3 112 82.1
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 2.3e-44 182.2 112 80.4
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 3.0e-44 181.8 110 81.8
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 3.9e-44 181.4 112 81.2
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 3.9e-44 181.4 112 81.2
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 6.6e-44 180.6 112 81.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 8.6e-44 180.3 113 80.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.1e-42 175.6 112 79.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 75.4
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 80.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 78.6
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 80.4
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 77.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 76.3
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 76.3
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 78.6
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 78.6
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 76.8
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 76.8
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 76.8
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 80.4
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 76.8
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 75.9
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.3e-41 172.2 113 77.9
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.3e-41 172.2 112 78.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.3e-41 172.2 112 77.7
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 75.0
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 75.9
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 74.6
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 75.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 78.6
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 78.6
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 75.0
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 76.8
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 77.7
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 75.4
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 5.2e-41 171.0 111 79.3
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 75.9
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 76.1
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 76.1
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 76.1
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 76.1
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 75.0
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 8.9e-41 170.2 113 77.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 8.9e-41 170.2 113 77.0
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.2e-40 169.9 112 74.1
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.5e-40 169.5 113 75.2
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.5e-40 169.5 110 79.1
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 76.8
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.6e-40 168.7 113 77.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 78.6
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 78.6
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 75.4
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 74.1
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 74.1
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 5.8e-40 167.5 110 74.5
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.5e-40 167.2 112 77.7
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 7.5e-40 167.2 112 74.1
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 7.5e-40 167.2 112 75.9
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 7.5e-40 167.2 113 76.1
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 74.6
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 9.8e-40 166.8 113 74.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 73.2
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 73.2
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.7e-39 164.9 105 78.1
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 4.9e-39 164.5 112 74.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.4e-39 164.1 112 75.0
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.3e-39 163.7 112 73.2
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.3e-39 163.7 112 73.2
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 110 72.7
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 110 72.7
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.9e-38 162.5 112 75.0
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 3.2e-38 161.8 140 63.6
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 111 72.1
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 7.1e-38 160.6 112 72.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 7.1e-38 160.6 108 74.1
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 9.2e-38 160.2 112 73.2
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 9.2e-38 160.2 112 73.2
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 9.2e-38 160.2 112 73.2
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 9.2e-38 160.2 113 72.6
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 73.2
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.6e-37 159.5 111 73.0
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 73.2
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 72.3
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.1e-37 159.1 111 71.2
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 2.1e-37 159.1 104 77.9
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 3.5e-37 158.3 112 72.3
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.3e-36 156.4 111 69.4
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.3e-36 156.4 113 70.8
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.1e-36 154.5 144 59.7
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 8.6e-36 153.7 143 58.7
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-35 153.3 112 70.5
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-35 152.5 105 75.2
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.3e-35 151.8 112 68.8
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 9.5e-35 150.2 114 68.4
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.0e-32 142.5 91 78.0
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.6e-32 142.1 80 86.2
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 3.4e-32 141.7 84 84.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.4e-32 141.7 114 65.8
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 5.8e-32 141.0 80 88.8
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 8.4e-31 137.1 77 88.3
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 8.4e-31 137.1 79 86.1
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.4e-30 136.3 92 77.2
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-30 136.0 98 71.4
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 7.1e-30 134.0 108 64.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 9.2e-30 133.7 77 85.7
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.6e-29 132.9 114 61.4
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.0e-28 130.2 83 78.3
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.0e-28 130.2 83 78.3
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 2.5e-27 125.6 77 81.8
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 3.1e-25 118.6 65 87.7
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 5.2e-25 117.9 110 59.1
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.9e-25 117.5 72 80.6
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.2e-23 112.5 77 74.0
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 8.4e-23 110.5 72 73.6
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.2e-22 108.6 106 53.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 9.3e-22 107.1 112 54.5
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.0e-20 103.6 103 57.3
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 3.0e-20 102.1 75 68.0
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-19 99.8 75 66.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.3e-19 98.2 102 51.0
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.0e-17 91.7 106 45.3
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 3.4e-16 88.6 95 54.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 7.6e-16 87.4 62 71.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.7e-15 86.3 59 69.5
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.9e-15 85.5 48 85.4
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.9e-15 84.7 76 55.3
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.2e-14 81.6 51 80.4
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.2e-13 80.1 45 86.7
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.7e-13 79.0 50 80.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 3.5e-13 78.6 106 44.3
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 4.6e-13 78.2 108 45.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.0e-13 77.8 56 69.6
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 2.3e-12 75.9 43 83.7
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-12 75.5 51 74.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.7e-12 74.3 92 53.3
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.7e-12 73.9 44 75.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.7e-12 73.9 100 45.0
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.1e-11 73.6 91 47.3
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.9e-11 72.8 43 79.1
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 4.3e-11 71.6 43 79.1
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 7.4e-11 70.9 53 67.9
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 7.4e-11 70.9 110 39.1
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.4e-09 65.9 58 58.6
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 4.0e-09 65.1 97 45.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.2e-08 63.5 59 50.8
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 4.5e-08 61.6 97 44.3


User provided reference genes

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