Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.9e-88 328.6 168 100.0
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.4e-53 213.4 173 69.9
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.4e-37 160.2 173 59.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.1e-36 157.1 194 54.1
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 9.7e-36 154.1 195 53.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 5.3e-34 148.3 192 52.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.7e-32 143.3 146 60.3
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.9e-32 142.5 187 50.3
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-31 140.6 187 50.3
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.1e-31 140.6 174 51.1
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-31 140.2 189 48.1
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 7.2e-31 137.9 182 47.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-30 136.7 203 46.8
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-30 136.7 185 50.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.1e-30 136.3 181 53.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.1e-30 136.3 194 46.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.7e-30 136.0 185 50.3
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.6e-30 135.6 149 57.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 6.1e-30 134.8 194 47.4
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.0e-29 134.0 193 45.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.0e-29 134.0 191 47.1
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.0e-29 134.0 185 49.7
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.0e-29 134.0 178 50.6
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.0e-29 134.0 175 50.3
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.0e-29 134.0 186 48.4
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.3e-29 132.9 201 45.3
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.3e-29 132.9 178 50.0
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.0e-29 132.5 191 50.3
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 4.0e-29 132.1 196 45.9
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.0e-29 132.1 178 48.9
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 4.0e-29 132.1 180 47.2
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.2e-29 131.7 162 53.1
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 5.2e-29 131.7 198 46.0
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 5.2e-29 131.7 201 46.3
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.8e-29 131.0 158 55.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.8e-29 131.0 203 44.3
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 8.8e-29 131.0 180 49.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 8.8e-29 131.0 171 49.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 8.8e-29 131.0 186 45.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-28 130.6 200 45.5
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-28 130.6 156 57.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-28 130.6 156 57.7
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.0e-28 129.8 203 43.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-28 129.8 187 47.1
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.0e-28 129.8 187 47.1
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.0e-28 129.8 182 47.3
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.6e-28 129.4 203 44.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 3.4e-28 129.0 176 48.3
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 3.4e-28 129.0 183 48.1
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.4e-28 129.0 187 47.1
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 5.7e-28 128.3 194 47.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 5.7e-28 128.3 178 48.9
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.7e-28 128.3 187 46.5
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 5.7e-28 128.3 178 48.9
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 5.7e-28 128.3 171 49.1
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 5.7e-28 128.3 193 47.2
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 9.8e-28 127.5 174 47.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 9.8e-28 127.5 180 46.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.3e-27 127.1 174 46.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 1.7e-27 126.7 187 48.1
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.7e-27 126.7 188 45.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 2.2e-27 126.3 203 43.3
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.2e-27 126.3 203 43.3
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.2e-27 126.3 203 43.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.8e-27 125.9 221 42.1
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.8e-27 125.9 163 47.2
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.7e-27 125.6 168 48.8
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.8e-27 125.2 174 46.6
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 6.3e-27 124.8 191 47.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 6.3e-27 124.8 189 47.6
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.1e-26 124.0 196 41.8
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.1e-26 124.0 189 46.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.1e-26 124.0 171 44.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.8e-26 123.2 185 47.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.4e-26 122.9 198 42.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 3.1e-26 122.5 203 43.8
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 4.1e-26 122.1 179 45.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.4e-26 121.7 184 45.1
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 5.4e-26 121.7 183 44.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 5.4e-26 121.7 193 45.6
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 9.1e-26 120.9 179 48.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-25 120.6 166 46.4
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.2e-25 120.6 146 51.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.2e-25 120.6 202 44.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.6e-25 120.2 183 44.3
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.6e-25 120.2 187 46.0
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.0e-25 119.8 178 42.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.0e-25 119.8 178 42.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.5e-25 119.0 207 42.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 4.5e-25 118.6 162 45.7
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.9e-25 118.2 188 43.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 7.7e-25 117.9 162 45.1
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.0e-24 117.5 186 45.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.0e-24 117.5 189 45.5
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-24 116.7 174 43.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.2e-24 116.3 173 42.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.2e-24 116.3 220 41.8
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.9e-24 115.9 177 46.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.8e-24 115.5 195 41.5
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 5.0e-24 115.2 146 50.0
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 5.0e-24 115.2 162 43.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.0e-24 115.2 153 46.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.0e-24 115.2 139 46.8
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.5e-24 114.8 113 61.9
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 6.5e-24 114.8 191 45.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 6.5e-24 114.8 114 55.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 8.5e-24 114.4 169 42.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-23 114.0 189 45.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-23 114.0 183 45.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-23 113.6 165 44.2
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.5e-23 113.6 181 45.3
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.9e-23 113.2 189 45.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.9e-23 113.2 176 46.6
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-23 112.8 175 44.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.2e-23 112.5 168 42.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.2e-23 112.5 161 43.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.2e-23 112.5 187 42.8
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.2e-23 112.1 163 41.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.2e-23 112.1 172 45.3
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.5e-23 111.7 145 49.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 5.5e-23 111.7 196 41.3
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 7.2e-23 111.3 166 43.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.4e-23 110.9 173 45.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-22 110.5 156 44.2
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.2e-22 110.5 117 55.6
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.2e-22 110.5 189 41.8
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.6e-22 110.2 190 40.5
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.1e-22 109.8 188 42.0
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.7e-22 109.4 195 42.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.6e-22 109.0 163 45.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 4.7e-22 108.6 161 42.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 6.1e-22 108.2 178 43.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 8.0e-22 107.8 152 42.1
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.0e-22 107.8 197 44.7
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.4e-21 107.1 185 40.5
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-21 106.7 188 43.6
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.8e-21 106.7 227 37.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.8e-21 106.7 187 44.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.3e-21 106.3 165 40.0
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 4.0e-21 105.5 204 40.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.8e-21 104.8 190 40.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.0e-20 103.2 194 39.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.6e-20 102.8 159 47.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.7e-20 101.7 183 42.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.3e-19 100.5 196 39.3
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.7e-19 100.1 165 45.5
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-19 99.4 189 41.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-19 99.4 189 41.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 8.3e-19 97.8 206 37.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-18 97.4 199 40.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.4e-18 97.1 186 40.3
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.1e-18 95.9 220 39.5
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 9.2e-18 94.4 109 50.5
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.7e-17 92.8 113 48.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 4.5e-17 92.0 199 37.7
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 7.7e-17 91.3 197 37.1
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 7.7e-17 91.3 197 37.1
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-16 90.9 198 36.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-16 90.5 118 52.5
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.7e-16 90.1 202 39.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.9e-16 89.4 182 39.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.0e-16 88.6 101 50.5
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 6.6e-16 88.2 203 34.0
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.5e-15 86.3 268 30.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.2e-14 84.0 169 40.2
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.0e-13 80.9 137 40.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 6.8e-13 78.2 139 39.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.2e-12 77.4 138 40.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-12 76.3 169 36.7
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.4e-12 75.9 174 36.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 3.4e-12 75.9 168 38.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-12 75.1 169 36.1
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.5e-12 74.7 174 36.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 7.5e-12 74.7 168 36.3
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.7e-11 73.6 173 37.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.1e-10 70.9 163 39.3
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.8e-10 70.1 99 47.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-10 69.7 171 36.8
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.2e-10 67.8 58 55.2
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.2e-09 67.4 64 54.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.9e-09 65.1 153 35.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.9e-08 62.4 153 35.3
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 2.5e-07 59.7 147 33.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.5e-07 59.7 81 51.9
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.3e-07 58.9 74 50.0


User provided reference genes

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