Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 0.0e+00 1353.6 685 100.0
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 0.0e+00 1135.9 693 82.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 7.9e-294 1013.4 705 75.5
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.8e-283 978.4 697 73.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 3.9e-232 808.5 689 60.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 4.3e-231 805.1 697 59.8
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.4e-229 799.3 694 59.2
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 6.8e-229 797.7 693 58.7
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.2e-227 792.7 694 57.9
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.9e-226 789.6 694 58.6
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 9.2e-226 787.3 697 59.1
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.8e-225 784.3 695 58.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.8e-225 784.3 695 58.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.8e-225 784.3 695 58.8
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.0e-224 783.9 694 58.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-224 783.1 694 59.1
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.5e-223 780.0 693 58.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-223 780.0 693 58.4
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.2e-221 771.5 692 59.0
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 9.0e-221 770.8 692 59.0
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.6e-220 769.2 695 57.4
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.3e-219 766.9 692 56.2
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.2e-219 766.1 697 57.8
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 3.8e-219 765.4 692 55.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.4e-218 763.5 693 58.9
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.7e-217 759.2 692 58.2
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.8e-217 757.7 693 58.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.0e-216 757.3 693 58.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.9e-215 753.1 697 57.1
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.1e-210 734.6 724 53.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 9.3e-210 734.2 694 56.6
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 9.3e-210 734.2 701 53.5
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.3e-206 723.8 722 54.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.6e-206 723.4 645 60.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.8e-206 722.6 697 54.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 4.8e-206 721.8 697 55.1
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 6.9e-205 718.0 703 55.2
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 5.8e-204 714.9 786 49.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.9e-203 712.6 695 53.7
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 3.8e-203 712.2 700 54.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 8.4e-203 711.1 648 56.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.2e-202 708.8 694 52.2
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.2e-201 707.2 696 53.9
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.9e-200 702.2 698 54.7
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 5.1e-200 701.8 733 52.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.1e-199 700.7 703 53.8
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.6e-199 698.4 694 53.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.3e-198 697.2 697 53.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.0e-196 689.9 697 53.4
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 5.8e-196 688.3 693 52.5
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-194 684.1 712 53.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.2e-193 680.6 689 52.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.9e-192 675.6 785 49.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 6.7e-192 674.9 696 53.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.3e-191 672.5 693 49.9
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 7.4e-191 671.4 709 50.1
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.3e-190 670.6 696 52.7
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.2e-190 669.8 693 50.6
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-189 667.2 696 50.3
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.4e-189 666.4 693 50.5
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 5.3e-189 665.2 696 50.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 6.9e-189 664.8 696 52.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.5e-186 656.4 696 52.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.1e-185 651.7 694 52.4
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.1e-185 651.7 694 51.3
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.3e-182 644.0 696 50.3
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.4e-181 640.6 694 50.1
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.5e-179 631.7 763 46.4
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.7e-176 621.7 696 47.0
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 4.4e-175 619.0 693 48.2
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 4.8e-174 615.5 696 48.9
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.8e-173 613.6 699 46.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.2e-172 610.9 716 46.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.0e-171 607.8 699 48.2
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.0e-171 607.8 598 53.3
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.6e-169 600.5 695 48.6
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 3.6e-169 599.4 717 46.6
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 6.1e-169 598.6 701 46.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.3e-166 590.9 700 46.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.2e-163 580.1 696 44.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.0e-163 578.9 697 46.6
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 6.5e-163 578.6 544 56.2
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.5e-163 578.2 698 47.1
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.4e-162 574.7 691 47.2
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.1e-161 573.5 654 48.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 4.0e-160 569.3 699 44.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 5.2e-160 568.9 776 44.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 3.3e-159 566.2 702 45.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-157 560.8 702 45.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 9.1e-157 558.1 702 45.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 9.1e-157 558.1 696 46.0
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-156 557.0 702 45.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.5e-156 555.8 702 45.3
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.0e-155 554.7 703 45.5
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-155 554.3 695 45.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.3e-155 554.3 635 49.1
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 7.2e-154 548.5 698 45.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.0e-152 543.1 696 43.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 9.8e-151 538.1 648 46.9
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 4.1e-149 532.7 538 49.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.7e-148 528.5 696 43.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.8e-144 515.4 697 43.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 4.5e-140 502.7 508 52.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.1e-121 440.7 698 40.0
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.2e-119 434.9 435 52.9
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.9e-114 417.5 468 48.7
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 4.3e-114 416.4 691 36.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 4.0e-112 409.8 702 38.0
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.3e-105 388.3 557 39.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 6.4e-102 375.9 602 37.2
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 7.1e-101 372.5 460 43.0
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.2e-100 371.7 261 71.3
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.1e-93 348.6 696 35.8
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 9.6e-90 335.5 242 69.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.1e-89 334.3 242 69.4
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.5e-87 328.2 532 38.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.1e-85 322.0 795 31.2
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.1e-85 322.0 795 31.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 4.2e-85 320.1 722 31.6
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.3e-82 310.1 238 65.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 2.1e-81 307.8 544 37.1
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.5e-74 284.3 362 42.3
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.4e-71 273.9 333 43.5
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-70 271.2 193 70.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.9e-69 268.1 192 69.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.5e-69 266.5 615 31.4
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 9.7e-66 255.8 199 60.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.9e-62 244.2 193 63.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.7e-57 227.3 717 27.2
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 4.8e-57 226.9 188 57.4
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 6.3e-57 226.5 544 29.4
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.2e-53 214.2 266 47.4
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.7e-51 206.5 299 39.8
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.3e-50 204.1 220 46.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.1e-48 199.1 143 71.3
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-48 198.7 211 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 2.9e-46 191.0 337 37.1
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 4.4e-42 177.2 180 48.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-40 172.6 144 61.1
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.2e-39 169.1 236 39.4
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.5e-39 167.5 174 50.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 4.0e-35 154.1 120 63.3
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 7.0e-32 143.3 181 41.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.5e-31 141.0 164 45.1
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 4.2e-29 134.0 84 81.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 7.5e-26 123.2 96 68.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.5e-21 108.2 318 26.4
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.8e-19 100.1 110 49.1
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-18 99.0 83 57.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.6e-18 98.2 82 58.5
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 4.4e-18 97.4 188 33.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.2e-17 95.1 201 32.3
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.1e-16 92.8 109 45.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 4.7e-12 77.4 110 40.0
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-09 69.3 88 40.9
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.4e-08 65.9 333 21.3
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-06 57.8 101 36.6
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 6.6e-06 57.0 50 54.0


User provided reference genes

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