Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 2.5e-167 592.0 304 100.0
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.9e-70 269.6 314 54.1
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 4.6e-60 235.7 329 48.3
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.1e-53 214.5 321 46.7
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 1.8e-24 117.5 282 32.6
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 5.3e-24 115.9 276 33.0
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-22 111.3 269 32.3
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.1e-21 108.2 272 30.1
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 4.2e-21 106.3 291 31.6
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 1.2e-20 104.8 277 30.3
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.2e-20 104.8 282 29.8
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.6e-20 104.4 275 29.5
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.1e-20 104.0 276 30.1
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 2.1e-20 104.0 274 33.2
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.6e-20 103.2 276 30.4
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 3.6e-20 103.2 275 29.8
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 3.6e-20 103.2 261 30.3
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 6.1e-20 102.4 276 30.4
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 6.1e-20 102.4 276 30.4
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 6.1e-20 102.4 282 31.9
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 6.1e-20 102.4 267 29.2
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.8e-19 100.9 268 29.5
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 2.3e-19 100.5 297 28.3
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.3e-19 100.5 313 26.8
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 3.0e-19 100.1 274 30.3
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.1e-19 99.4 272 28.7
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 6.7e-19 99.0 191 33.5
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 8.8e-19 98.6 279 28.0
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 8.8e-19 98.6 275 31.3
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 1.1e-18 98.2 279 28.3
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 2.6e-18 97.1 271 27.7
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.3e-18 96.7 276 29.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.7e-18 95.9 280 28.9
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 9.7e-18 95.1 277 30.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 9.7e-18 95.1 285 29.5
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 2.2e-17 94.0 259 26.3
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 2.2e-17 94.0 268 29.1
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.8e-17 93.6 281 28.1
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.7e-17 93.2 194 32.0
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 3.7e-17 93.2 271 29.2
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 3.7e-17 93.2 270 30.0
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 3.7e-17 93.2 271 30.3
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 4.8e-17 92.8 272 29.8
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 6.3e-17 92.4 273 27.8
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 6.3e-17 92.4 260 29.6
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.1e-16 91.7 268 29.5
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 1.1e-16 91.7 264 30.3
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.4e-16 91.3 275 29.1
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.4e-16 91.3 276 30.8
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.4e-16 90.5 261 29.1
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 2.4e-16 90.5 260 29.2
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 2.4e-16 90.5 179 32.4
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 3.1e-16 90.1 214 30.8
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 7.0e-16 89.0 273 27.8
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 9.1e-16 88.6 302 27.2
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.2e-15 88.2 274 30.3
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.2e-15 88.2 277 28.2
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.6e-15 87.8 277 28.9
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.6e-15 87.8 277 28.9
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.6e-15 87.8 222 31.1
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 1.6e-15 87.8 280 28.2
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 1.6e-15 87.8 287 28.6
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.0e-15 87.4 220 30.5
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 2.0e-15 87.4 358 27.9
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.0e-15 87.4 312 28.5
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 2.6e-15 87.0 205 31.7
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.6e-15 87.0 266 30.8
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 4.5e-15 86.3 266 26.3
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.9e-15 85.9 250 32.0
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 5.9e-15 85.9 270 26.3
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 5.9e-15 85.9 274 29.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 5.9e-15 85.9 278 28.8
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 5.9e-15 85.9 199 33.2
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 7.7e-15 85.5 201 31.3
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 7.7e-15 85.5 222 30.6
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 1.0e-14 85.1 269 29.4
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 1.3e-14 84.7 347 26.8
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.3e-14 84.7 273 28.2
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.3e-14 84.7 317 25.2
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.7e-14 84.3 277 27.4
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 2.2e-14 84.0 265 30.2
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.8e-14 83.2 291 25.4
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 5.0e-14 82.8 188 30.9
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 5.0e-14 82.8 308 26.9
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 8.5e-14 82.0 224 27.7
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.9e-13 80.9 191 30.9
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 1.9e-13 80.9 326 25.2
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.5e-13 80.5 268 27.6
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 2.5e-13 80.5 260 27.7
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.2e-13 80.1 277 27.1
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 4.2e-13 79.7 288 27.4
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 5.5e-13 79.3 188 31.9
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 5.5e-13 79.3 297 26.9
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 7.2e-13 79.0 252 27.4
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 9.4e-13 78.6 277 27.8
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 9.4e-13 78.6 279 26.2
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.2e-12 78.2 257 30.7
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-12 78.2 263 27.4
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.6e-12 77.8 189 28.0
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-12 77.8 192 31.2
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 1.6e-12 77.8 274 27.4
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.1e-12 77.4 193 31.1
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 2.7e-12 77.0 193 31.1
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 3.6e-12 76.6 257 30.4
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 3.6e-12 76.6 129 34.9
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 6.1e-12 75.9 264 26.1
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 8.0e-12 75.5 179 29.1
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 8.0e-12 75.5 272 30.1
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 1.4e-11 74.7 188 30.9
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.8e-11 74.3 252 27.0
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.8e-11 74.3 206 28.6
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 2.3e-11 73.9 248 26.2
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 3.0e-11 73.6 248 26.2
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 3.0e-11 73.6 284 26.8
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 3.0e-11 73.6 191 28.8
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 4.0e-11 73.2 204 28.4
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 4.0e-11 73.2 169 33.1
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 5.2e-11 72.8 192 31.8
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 8.8e-11 72.0 182 29.1
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.1e-10 71.6 194 31.4
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 1.5e-10 71.2 186 30.6
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 2.6e-10 70.5 170 30.0
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 7.5e-10 68.9 283 25.8
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 9.7e-10 68.6 185 28.6
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 1.3e-09 68.2 273 24.9
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 1.7e-09 67.8 250 26.8
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 2.2e-09 67.4 135 31.1
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.2e-09 67.4 203 30.0
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 2.8e-09 67.0 290 25.5
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 2.8e-09 67.0 253 28.1
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 3.7e-09 66.6 309 23.9
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 8.2e-09 65.5 225 28.4
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 8.2e-09 65.5 255 24.7
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.4e-08 64.7 250 26.8
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 1.8e-08 64.3 115 32.2
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 2.4e-08 63.9 166 28.3
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.4e-08 63.9 171 24.0
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 3.1e-08 63.5 174 28.2
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 4.1e-08 63.2 168 26.8
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 9.1e-08 62.0 165 27.9
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.6e-07 61.2 209 26.8
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 4.5e-07 59.7 291 26.5
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 4.5e-07 59.7 121 32.2
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 5.9e-07 59.3 165 27.9
Dinv44099 Davidia involucrata HOM05D002766 ORTHO05D002809 5.9e-07 59.3 154 29.9
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 5.9e-07 59.3 202 29.2
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 7.7e-07 58.9 130 29.2
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 1.0e-06 58.5 113 32.7
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.7e-06 57.8 178 27.5
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 1.7e-06 57.8 175 26.9
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.9e-06 57.0 184 25.0
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 2.9e-06 57.0 184 26.1


User provided reference genes

Program Settings