Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 6.5e-184 647.5 391 100.0
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 5.8e-140 501.5 391 69.6
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.9e-138 496.5 391 68.8
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 6.8e-133 478.0 371 70.4
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.5e-124 450.3 287 79.8
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.1e-114 417.5 326 65.6
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 8.7e-112 407.9 350 60.9
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 3.7e-110 402.5 326 61.3
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 6.2e-110 401.7 321 62.6
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 6.2e-110 401.7 321 62.6
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 1.1e-106 391.0 307 65.8
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 5.5e-106 388.7 316 61.1
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 2.1e-105 386.7 337 59.9
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 2.3e-104 383.3 336 60.7
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 8.7e-104 381.3 328 60.1
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 8.7e-104 381.3 309 61.8
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.5e-103 380.6 321 61.4
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.5e-103 380.6 321 61.4
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.5e-103 380.6 328 60.4
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.3e-103 379.4 327 59.6
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.6e-102 377.1 337 59.3
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 1.6e-102 377.1 310 62.3
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.1e-102 376.7 328 60.1
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.1e-101 374.4 331 58.0
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 4.1e-101 372.5 336 59.8
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 6.9e-101 371.7 312 59.3
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 2.6e-100 369.8 309 60.8
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 3.4e-100 369.4 306 59.5
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 7.6e-100 368.2 311 60.5
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.2e-99 366.7 301 62.5
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 2.9e-99 366.3 307 60.3
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 3.8e-99 365.9 313 60.1
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 3.8e-99 365.9 313 60.1
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 5.0e-99 365.5 314 58.9
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 6.5e-99 365.2 325 57.2
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.1e-98 364.4 308 59.4
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.1e-98 364.4 338 57.7
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 2.5e-98 363.2 310 59.4
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 3.2e-98 362.8 315 59.4
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 9.3e-98 361.3 323 58.2
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 2.7e-97 359.8 324 56.5
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 6.1e-97 358.6 334 56.6
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 7.9e-97 358.2 329 55.3
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.0e-96 357.8 320 57.8
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.3e-96 356.7 298 58.4
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 6.7e-96 355.1 335 56.7
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.5e-95 354.0 319 58.0
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.5e-95 354.0 341 56.9
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 1.9e-95 353.6 302 59.3
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 3.3e-95 352.8 326 55.5
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 4.3e-95 352.4 319 56.1
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.3e-95 352.4 328 57.0
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 5.7e-95 352.1 325 55.4
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 7.4e-95 351.7 304 59.2
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 9.7e-95 351.3 305 59.0
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.6e-94 350.5 329 57.1
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.6e-94 350.5 335 54.3
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 4.8e-94 349.0 320 55.0
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 4.8e-94 349.0 313 57.2
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 4.8e-94 349.0 315 56.2
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 8.2e-94 348.2 315 55.9
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.1e-93 347.8 319 56.7
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.4e-93 347.4 347 52.7
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 2.4e-93 346.7 319 54.9
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 2.4e-93 346.7 319 54.9
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.1e-93 346.3 334 55.1
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 4.1e-93 345.9 333 55.3
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 9.0e-93 344.7 319 54.5
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 9.0e-93 344.7 312 55.8
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 9.0e-93 344.7 324 57.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.2e-92 344.4 314 55.4
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.5e-92 344.0 304 56.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 3.4e-92 342.8 306 57.5
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 7.7e-92 341.7 304 57.9
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.7e-92 341.7 387 48.1
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.0e-91 341.3 306 56.9
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.0e-91 341.3 316 55.4
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.3e-91 340.9 333 55.0
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.2e-91 340.1 302 58.9
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 5.0e-91 339.0 312 55.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.5e-91 338.2 304 57.2
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 8.5e-91 338.2 319 54.5
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.4e-90 337.4 348 49.7
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.4e-90 337.4 295 55.9
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 4.2e-90 335.9 322 53.4
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 1.2e-89 334.3 313 53.7
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.6e-89 334.0 314 55.1
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.6e-89 334.0 317 54.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.1e-89 333.6 310 55.2
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.4e-88 330.9 291 56.4
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 2.3e-88 330.1 293 56.7
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 1.5e-87 327.4 298 59.4
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.3e-86 324.3 282 57.1
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.1e-85 321.2 340 51.8
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.1e-85 321.2 293 56.0
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.8e-85 320.5 291 56.0
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 5.3e-85 318.9 291 55.0
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 9.1e-85 318.2 306 53.3
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.7e-83 313.9 325 49.8
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 2.9e-83 313.2 336 49.4
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.4e-80 304.3 296 54.1
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.0e-76 290.4 315 50.2
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 6.7e-72 275.4 325 48.0
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 5.7e-71 272.3 304 50.0
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.4e-61 240.4 313 45.0
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 2.5e-58 230.3 263 49.8
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 3.2e-58 229.9 247 50.2
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.5e-55 221.1 236 48.3
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 1.3e-54 218.0 293 41.3
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 9.5e-50 201.8 183 55.7
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 8.9e-48 195.3 361 36.3
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 4.9e-46 189.5 270 40.7
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 2.8e-41 173.7 238 40.3
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.1e-40 170.2 159 57.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.5e-39 167.9 240 42.5
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.6e-39 167.2 149 59.7
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 5.8e-39 166.0 117 71.8
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 3.9e-35 153.3 277 36.5
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 3.6e-33 146.7 113 67.3
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 8.1e-33 145.6 157 44.6
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 5.2e-32 142.9 150 48.0
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 1.7e-30 137.9 161 48.4
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 3.5e-28 130.2 150 49.3
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.3e-27 128.3 147 47.6
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.3e-27 128.3 151 46.4
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 5.2e-24 116.3 126 52.4
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 4.4e-23 113.2 192 37.5
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 7.1e-21 105.9 94 52.1
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.9e-13 81.3 250 26.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.5e-07 61.6 116 36.2
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.0e-07 61.2 117 35.9
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 7.6e-07 59.3 62 37.1
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.3e-06 58.5 104 36.5
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.3e-06 58.5 137 33.6
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.3e-06 58.5 134 31.3
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.3e-06 58.5 80 36.2
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 2.2e-06 57.8 137 32.8
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.2e-06 57.8 119 32.8
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.9e-06 57.4 106 36.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.9e-06 57.4 105 35.2
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.8e-06 57.0 105 35.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.9e-06 56.6 106 34.9
Lj3g0012882 Lotus japonicus HOM05D002747 ORTHO05D003069 4.9e-06 56.6 55 47.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 6.4e-06 56.2 100 35.0
Psat4g200400 Pisum sativum HOM05D002747 ORTHO05D003069 8.4e-06 55.8 55 47.3


User provided reference genes

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