Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 1.3e-255 885.9 455 100.0
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 8.0e-218 760.4 460 85.4
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 9.2e-214 746.9 480 82.1
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 9.2e-214 746.9 490 81.2
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 5.8e-184 647.9 452 73.7
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 1.3e-183 646.7 435 75.6
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 4.9e-183 644.8 453 73.1
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 6.4e-183 644.4 404 78.5
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.9e-182 642.9 454 74.2
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 2.7e-181 639.0 454 74.0
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 4.6e-181 638.3 449 73.1
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 1.0e-180 637.1 437 73.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 1.8e-180 636.3 455 70.8
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 3.0e-180 635.6 449 73.1
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 3.0e-180 635.6 452 71.9
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 5.1e-180 634.8 458 72.5
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 3.3e-179 632.1 457 71.6
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 3.7e-178 628.6 464 69.6
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 3.7e-178 628.6 407 75.7
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 3.7e-178 628.6 466 69.5
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 6.2e-178 627.9 411 75.7
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 8.1e-178 627.5 431 72.2
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.4e-177 625.9 458 71.0
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 4.0e-177 625.2 455 70.3
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 6.9e-177 624.4 464 69.2
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 1.5e-176 623.2 386 78.8
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 2.6e-176 622.5 466 70.6
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-176 622.1 442 71.9
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.5e-176 621.7 452 71.2
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 7.6e-176 620.9 464 69.8
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 7.6e-176 620.9 464 70.7
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.3e-175 620.2 432 71.5
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.7e-175 619.8 470 68.5
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 2.2e-175 619.4 460 70.0
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 3.8e-175 618.6 450 71.6
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 6.4e-175 617.8 454 70.5
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 8.4e-175 617.5 454 70.5
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.4e-174 616.7 454 70.5
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 5.5e-174 614.8 444 72.5
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 7.1e-174 614.4 462 68.8
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 7.1e-174 614.4 454 70.3
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 7.9e-173 610.9 441 69.6
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.0e-172 610.5 374 78.9
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 1.3e-172 610.1 448 71.2
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 3.0e-172 609.0 462 69.0
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 6.7e-172 607.8 442 69.7
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 8.7e-172 607.4 457 71.3
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 1.1e-171 607.1 453 69.1
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 2.5e-171 605.9 459 68.8
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 3.3e-171 605.5 442 71.5
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 3.3e-171 605.5 462 69.3
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.3e-170 603.6 456 70.2
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 8.2e-170 600.9 432 69.0
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 1.1e-169 600.5 382 78.3
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 1.8e-169 599.7 414 72.2
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 9.0e-169 597.4 427 70.5
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 9.0e-169 597.4 467 67.0
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 3.4e-168 595.5 396 73.7
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.8e-168 594.7 399 74.2
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 7.6e-168 594.3 374 75.9
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 7.6e-168 594.3 432 70.4
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 7.6e-168 594.3 425 71.8
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.0e-167 594.0 456 69.1
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.3e-167 593.6 399 74.2
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 3.8e-167 592.0 448 68.1
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 6.5e-167 591.3 430 68.1
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 8.4e-167 590.9 429 70.2
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 2.5e-166 589.3 463 65.2
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.6e-165 586.6 375 75.2
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 6.0e-165 584.7 450 66.9
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 2.3e-164 582.8 464 64.7
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 3.9e-164 582.0 456 66.7
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.3e-162 577.0 374 75.1
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.3e-162 577.0 456 67.3
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.6e-162 576.6 455 67.3
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 2.2e-162 576.2 450 66.4
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.1e-161 573.9 450 66.0
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 5.3e-161 571.6 459 65.8
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 1.2e-160 570.5 402 69.7
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 1.5e-160 570.1 409 70.7
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 1.5e-160 570.1 462 65.2
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 1.0e-159 567.4 459 64.9
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.7e-159 566.6 430 67.7
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 3.8e-159 565.5 455 65.5
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 6.5e-159 564.7 455 65.3
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 6.5e-159 564.7 455 65.3
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 1.4e-158 563.5 460 64.1
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 4.2e-158 562.0 465 63.4
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 5.5e-158 561.6 439 66.3
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 5.5e-158 561.6 457 65.2
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 7.2e-158 561.2 450 67.8
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 9.3e-158 560.8 456 64.5
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 2.7e-157 559.3 462 63.2
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 2.7e-157 559.3 462 63.2
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 6.7e-156 554.7 430 64.9
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 9.1e-153 544.3 457 64.6
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 8.8e-148 527.7 447 61.1
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.2e-141 507.3 315 78.1
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.6e-139 499.6 345 73.0
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 6.3e-138 495.0 379 63.1
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 5.3e-137 491.9 459 54.9
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 5.3e-137 491.9 433 58.7
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.3e-132 476.5 327 74.3
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.4e-108 397.5 384 53.6
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 2.3e-108 396.7 413 51.6
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.6e-104 384.0 403 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 1.5e-102 377.5 421 47.0
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 5.6e-102 375.6 360 51.7
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.6e-99 366.7 248 73.0
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 1.3e-95 354.4 402 49.8
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 6.6e-95 352.1 369 49.3
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.5e-78 297.0 315 48.6
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.4e-76 291.2 381 44.9
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 6.9e-76 288.9 344 43.3
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 6.4e-58 229.2 136 79.4
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 7.7e-43 179.1 322 41.6
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.1e-41 175.3 104 78.8
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 2.1e-40 171.0 97 78.4
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 8.2e-29 132.5 83 78.3
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 1.8e-28 131.3 89 74.2
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 4.1e-28 130.2 83 77.1
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.3e-26 125.2 268 32.5
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 5.0e-26 123.2 325 28.6
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.4e-25 121.7 72 80.6
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 1.4e-23 115.2 83 68.7
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 2.3e-23 114.4 125 56.8
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 2.6e-22 110.9 350 28.6
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.1e-20 103.6 134 51.5
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 8.0e-16 89.4 122 44.3
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-14 84.0 125 46.4
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 7.5e-14 82.8 72 61.1
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 3.4e-06 57.4 101 41.6


User provided reference genes

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