Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.8e-107 392.5 191 100.0
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 7.9e-66 254.2 140 87.9
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.0e-65 253.8 140 87.9
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.0e-65 253.8 140 87.9
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.8e-65 253.1 171 78.4
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.8e-65 253.1 140 87.9
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.3e-65 252.7 140 87.9
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.0e-65 252.3 140 86.4
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.0e-65 252.3 140 87.1
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 3.9e-65 251.9 140 88.6
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.9e-65 251.9 140 87.1
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 5.1e-65 251.5 140 87.1
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 6.7e-65 251.1 140 87.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 6.7e-65 251.1 140 86.4
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 8.7e-65 250.8 140 85.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.1e-64 250.4 178 75.3
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.9e-64 249.6 130 91.5
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 86.4
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 87.9
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 87.1
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 87.1
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 87.1
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 85.7
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.9e-64 249.6 140 85.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.5e-64 249.2 140 86.4
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.5e-64 249.2 140 85.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 3.3e-64 248.8 140 86.4
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.3e-64 248.8 140 86.4
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 3.3e-64 248.8 130 90.8
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 3.3e-64 248.8 140 85.0
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.3e-64 248.4 140 85.0
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 4.3e-64 248.4 140 85.7
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 4.3e-64 248.4 140 85.7
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 5.6e-64 248.1 140 83.6
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 5.6e-64 248.1 140 86.4
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 7.4e-64 247.7 140 85.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 7.4e-64 247.7 140 86.4
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 9.6e-64 247.3 140 85.7
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 9.6e-64 247.3 140 86.4
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 9.6e-64 247.3 140 85.0
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-63 246.9 140 84.3
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.3e-63 246.9 140 85.7
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.3e-63 246.9 140 83.6
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.3e-63 246.9 140 83.6
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.6e-63 246.5 140 85.0
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.6e-63 246.5 140 84.3
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 2.1e-63 246.1 140 82.9
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 85.0
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 83.6
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 83.6
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 83.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 2.8e-63 245.7 140 85.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 3.6e-63 245.4 140 83.6
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.8e-63 245.0 140 84.3
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 4.8e-63 245.0 140 83.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 8.1e-63 244.2 140 85.7
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.1e-62 243.8 140 84.3
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.1e-62 243.8 134 88.1
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.4e-62 243.4 166 75.9
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.8e-62 243.0 130 87.7
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 2.4e-62 242.7 140 82.9
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 2.4e-62 242.7 140 82.9
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 2.4e-62 242.7 140 82.9
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 4.0e-62 241.9 147 82.3
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 4.0e-62 241.9 140 83.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.0e-62 241.9 140 82.9
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.3e-62 241.5 150 80.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.3e-62 241.5 150 80.0
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 6.9e-62 241.1 140 84.3
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 6.9e-62 241.1 140 85.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 9.0e-62 240.7 140 81.4
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 9.0e-62 240.7 140 82.1
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.2e-61 240.4 140 85.0
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.2e-61 240.4 140 82.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.2e-61 240.4 140 82.9
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.2e-61 240.4 140 85.0
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.5e-61 240.0 140 82.9
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.5e-61 240.0 140 82.1
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.6e-61 239.2 140 80.7
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.6e-61 239.2 140 84.3
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 3.4e-61 238.8 140 80.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 3.4e-61 238.8 140 80.7
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 3.4e-61 238.8 143 81.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 3.4e-61 238.8 140 80.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.4e-61 238.8 140 80.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 4.5e-61 238.4 140 80.0
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 7.6e-61 237.7 152 78.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 9.9e-61 237.3 140 80.0
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.3e-60 236.9 162 74.1
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.3e-60 236.9 140 81.4
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-60 236.5 140 79.3
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 2.2e-60 236.1 140 79.3
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.9e-60 235.7 140 78.6
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 2.9e-60 235.7 140 80.0
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.9e-60 235.7 140 78.6
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.8e-60 235.3 140 80.7
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 4.9e-60 235.0 140 82.1
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 6.4e-60 234.6 140 79.3
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 6.4e-60 234.6 153 76.5
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 6.4e-60 234.6 167 71.3
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.2e-59 232.3 140 82.1
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 5.5e-59 231.5 140 80.0
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.1e-58 229.6 130 85.4
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.3e-57 226.9 145 78.6
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.1e-56 223.8 140 74.3
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.6e-56 221.5 140 72.1
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.4e-56 221.1 140 73.6
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.6e-55 219.9 140 72.9
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.1e-54 217.2 140 72.9
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.1e-54 217.2 140 71.4
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.6e-53 212.6 202 57.4
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.0e-52 210.7 140 69.3
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.3e-52 210.3 140 68.6
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 6.5e-52 208.0 140 67.9
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.5e-48 196.8 140 72.1
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 8.2e-39 164.5 180 55.0
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 6.9e-38 161.4 106 77.4
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.2e-37 160.6 140 55.0
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.5e-37 160.2 129 62.8
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 3.8e-36 155.6 133 57.9
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 5.0e-36 155.2 89 86.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 6.5e-36 154.8 83 86.7
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 8.5e-36 154.5 81 92.6
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.5e-35 152.9 129 54.3
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 7.2e-35 151.4 79 91.1
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.7e-34 149.4 82 85.4
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 4.6e-34 148.7 78 85.9
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.9e-34 147.9 89 83.1
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 4.4e-32 142.1 89 78.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.7e-31 139.0 140 51.4
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.0e-20 104.4 127 42.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 2.9e-20 102.8 51 90.2
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.5e-19 99.8 51 86.3
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 7.2e-19 98.2 51 84.3
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-18 97.1 51 82.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.6e-18 97.1 52 78.8
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 8.8e-17 91.3 51 82.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.2e-15 84.7 47 78.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.4e-14 84.0 46 89.1
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 4.1e-14 82.4 43 83.7
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 5.9e-13 78.6 42 83.3
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 5.9e-13 78.6 42 83.3
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.0e-12 77.8 40 85.0
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.7e-12 77.0 42 81.0
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 3.8e-12 75.9 40 85.0


User provided reference genes

Program Settings