Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 4.4e-153 544.7 291 100.0
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 5.1e-125 451.4 302 84.4
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 6.2e-123 444.5 296 83.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 7.1e-119 431.0 304 80.3
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 2.7e-118 429.1 300 82.0
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.9e-95 353.2 293 68.9
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 2.5e-95 352.8 300 67.7
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 9.4e-95 350.9 292 68.8
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 9.4e-95 350.9 299 68.6
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 3.6e-94 349.0 293 70.6
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 1.4e-93 347.1 298 66.4
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.4e-93 347.1 254 76.0
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.3e-93 346.3 299 68.9
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.3e-93 346.3 299 68.9
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.9e-93 345.5 293 67.2
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 5.2e-93 345.1 297 68.4
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 8.8e-93 344.4 295 66.4
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 7.4e-92 341.3 287 68.6
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.7e-91 340.1 292 66.8
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.2e-91 339.7 298 66.4
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.8e-91 339.3 217 82.9
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 3.7e-91 339.0 293 67.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.7e-91 339.0 217 82.9
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.7e-91 339.0 217 82.9
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.7e-91 339.0 305 65.2
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 4.8e-91 338.6 301 66.4
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 4.8e-91 338.6 293 67.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 4.8e-91 338.6 217 82.9
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 6.3e-91 338.2 251 74.5
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 6.3e-91 338.2 302 66.6
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.3e-91 338.2 298 66.8
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 8.2e-91 337.8 298 68.1
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.1e-90 337.4 296 67.6
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.4e-90 337.0 297 66.3
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.4e-90 337.0 252 73.8
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.4e-90 336.3 298 67.1
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 4.1e-90 335.5 209 84.2
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.3e-90 335.1 309 65.7
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 5.3e-90 335.1 264 71.6
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 7.0e-90 334.7 297 67.7
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 7.0e-90 334.7 299 67.9
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 9.1e-90 334.3 294 66.7
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 9.1e-90 334.3 292 66.1
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 1.2e-89 334.0 296 67.9
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-89 333.6 216 81.9
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.6e-89 333.6 302 64.9
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.5e-89 332.0 207 84.1
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 4.5e-89 332.0 243 74.5
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 5.9e-89 331.6 295 65.8
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.7e-89 331.3 302 64.9
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 7.7e-89 331.3 292 65.8
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 7.7e-89 331.3 290 66.2
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.0e-88 330.9 296 65.5
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.3e-88 330.5 299 65.2
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.3e-88 330.5 288 68.4
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.7e-88 330.1 290 64.1
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.2e-88 329.7 296 66.2
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 2.9e-88 329.3 306 63.7
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 2.9e-88 329.3 293 67.2
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.8e-88 328.9 292 66.4
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.8e-88 328.9 294 66.7
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 3.8e-88 328.9 296 66.2
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 3.8e-88 328.9 266 68.8
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 5.0e-88 328.6 297 65.7
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 5.0e-88 328.6 286 66.4
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.1e-87 327.4 299 65.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.5e-87 327.0 299 64.2
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.5e-87 327.0 303 65.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 1.9e-87 326.6 299 64.2
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 3.2e-87 325.9 209 83.3
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 3.2e-87 325.9 295 65.4
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 7.2e-87 324.7 297 64.6
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 7.2e-87 324.7 266 68.0
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 9.4e-87 324.3 292 64.4
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.2e-86 323.9 297 64.6
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.7e-86 322.8 292 63.7
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.7e-86 322.8 263 68.8
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.6e-86 322.4 298 64.8
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.7e-86 322.0 303 65.0
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 6.1e-86 321.6 287 65.2
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 8.0e-86 321.2 298 64.8
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.0e-86 321.2 217 79.3
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 1.0e-85 320.9 282 67.0
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.3e-85 319.7 296 65.9
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 3.0e-85 319.3 214 79.4
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.2e-84 317.4 303 62.7
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.2e-83 313.2 297 62.3
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 2.8e-83 312.8 296 63.5
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 2.8e-83 312.8 299 64.2
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 3.7e-83 312.4 299 61.5
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.7e-83 312.4 299 61.5
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.7e-83 312.4 310 62.6
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 3.7e-83 312.4 351 56.4
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 8.3e-83 311.2 305 60.7
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 8.3e-83 311.2 253 70.0
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.4e-82 309.7 195 82.1
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.4e-82 309.7 249 69.9
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 4.1e-82 308.9 295 61.4
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-81 307.4 275 64.0
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.2e-81 307.4 275 64.0
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.6e-81 307.0 195 81.5
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 2.7e-81 306.2 307 59.6
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 2.7e-81 306.2 201 79.1
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 7.7e-81 304.7 297 61.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.3e-80 303.9 303 61.1
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.2e-80 303.1 218 74.8
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.9e-80 302.8 306 60.5
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 6.5e-80 301.6 218 74.3
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 6.5e-80 301.6 295 62.4
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 8.5e-80 301.2 285 61.4
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.1e-79 300.8 218 74.3
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.1e-79 300.8 219 74.9
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.5e-79 300.4 301 60.8
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 3.2e-79 299.3 299 59.2
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.2e-79 299.3 192 81.8
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.2e-79 299.3 298 61.4
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 7.2e-79 298.1 243 69.1
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-78 297.4 218 74.3
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.2e-78 297.4 357 53.2
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.1e-78 296.6 284 60.9
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 8.0e-78 294.7 299 58.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 5.2e-77 292.0 297 57.2
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.2e-76 290.8 199 77.4
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.7e-75 287.0 201 75.1
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 6.3e-75 285.0 182 80.8
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 8.3e-75 284.6 292 60.3
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.4e-74 283.9 193 77.7
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 7.0e-74 281.6 280 59.6
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.2e-73 280.8 224 68.3
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.6e-73 280.4 289 57.4
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.3e-72 276.6 275 60.4
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.6e-72 275.0 380 50.8
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.1e-71 274.2 196 73.5
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.5e-71 273.9 215 67.9
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.9e-71 273.5 261 59.0
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.0e-69 267.7 241 60.6
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.0e-69 265.8 255 63.5
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 8.9e-69 264.6 364 50.8
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 8.9e-69 264.6 241 61.0
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 9.8e-68 261.2 202 68.8
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 4.9e-67 258.8 252 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.8e-66 256.9 212 65.1
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-64 250.8 180 75.0
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 2.1e-62 243.4 317 50.5
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 2.3e-56 223.4 181 61.9
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 6.2e-54 215.3 237 52.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.3e-48 197.6 182 61.5
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 3.3e-47 193.0 134 73.9
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.3e-47 193.0 194 59.3
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.3e-39 166.4 107 85.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.2e-36 157.9 212 46.7
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 3.2e-34 149.8 187 46.0
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.3e-32 144.4 89 77.5
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 5.6e-31 139.0 129 58.9
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 5.3e-29 132.5 205 41.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 8.4e-27 125.2 185 42.2
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.5e-23 113.6 79 70.9
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 8.1e-22 108.6 78 78.2
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 1.4e-21 107.8 63 87.3
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 4.0e-21 106.3 63 85.7
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.2e-20 104.8 95 57.9
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 8.7e-16 88.6 219 35.6
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 7.6e-12 75.5 42 88.1
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 8.7e-08 62.0 42 71.4


User provided reference genes

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