Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013312 Sechium edule HOM05D004529 ORTHO05D005884 0.0e+00 1985.3 1000 100.0
ClCG01G014790 Citrullus lanatus HOM05D004529 ORTHO05D005884 0.0e+00 1355.9 1060 69.6
CsaV3_1G007540 Cucumis sativus L. HOM05D004529 ORTHO05D005884 0.0e+00 1256.1 1076 65.4
MELO3C002172.2 Cucumis melo HOM05D004529 ORTHO05D005884 0.0e+00 1176.0 1075 62.4
Haze_18337 Corylus avellana HOM05D004529 ORTHO05D005884 1.4e-121 441.8 1108 33.5
QL10p034152 Quercus lobata HOM05D004529 ORTHO05D005884 7.4e-115 419.5 1056 33.8
Prupe.5G240600 Prunus persica HOM05D004529 ORTHO05D005884 1.7e-106 391.7 1089 34.4
Ciclev10018551m.g Citrus clementina HOM05D004529 ORTHO05D005884 1.1e-105 389.0 1123 33.0
Duzib177G0816 Durio zibethinus HOM05D004529 ORTHO05D005884 2.6e-104 384.4 1096 33.1
FAN04G1556 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.9e-103 380.9 1097 32.8
FAN18G3802 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.2e-102 377.5 1091 32.4
FvH4_5g18040 Fragaria vesca HOM05D004529 ORTHO05D005884 1.2e-101 375.6 1091 32.4
Dinv11730 Davidia involucrata HOM05D004529 ORTHO05D005884 2.7e-101 374.4 1114 32.0
RcHm_v2.0_Chr7g0177561 Rosa chinensis HOM05D004529 ORTHO05D005884 1.4e-97 362.1 1086 32.3
FAN08G2030 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.5e-96 358.6 1081 32.4
Atru.chr9.71 Acer truncatum HOM05D004529 ORTHO05D005884 5.5e-94 350.1 1093 32.2
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 4.4e-91 340.5 1052 31.9
Thecc.05G197800 Theobroma cacao HOM05D004529 ORTHO05D005884 7.4e-91 339.7 1112 30.2
TAR371G0876 Trochodendron aralioides HOM05D004529 ORTHO05D005884 9.7e-91 339.3 1095 31.8
MD14G1242900 Malus domestica HOM05D004529 ORTHO05D005884 7.0e-89 333.2 1020 34.0
CANSAT64G3027 Cannabis sativa HOM05D004529 ORTHO05D005884 1.2e-88 332.4 1080 31.9
COL.COLO4_08720 Corchorus olitorius HOM05D004529 ORTHO05D005884 7.7e-88 329.7 1131 30.5
Duzib128G0682 Durio zibethinus HOM05D004529 ORTHO05D005884 2.2e-87 328.2 1066 30.9
Potri.004G068700 Populus trichocarpa HOM05D004529 ORTHO05D005884 2.9e-87 327.8 976 31.7
Lalb_Chr22g0354001 Lupinus albus HOM05D004529 ORTHO05D005884 1.2e-85 322.4 1077 29.6
TWI81G0141 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 1.6e-85 322.0 1152 29.0
Sabra04G0046400 Salix brachista HOM05D004529 ORTHO05D005884 3.6e-85 320.9 732 35.0
Phvul.L001671 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 1.4e-84 318.9 1100 30.4
TAR629G2105 Trochodendron aralioides HOM05D004529 ORTHO05D005884 2.0e-83 315.1 958 31.2
MD06G1235900 Malus domestica HOM05D004529 ORTHO05D005884 2.6e-83 314.7 1015 32.6
CSS0033935 Camellia sinensis var. sinensis HOM05D004529 ORTHO05D005884 7.5e-83 313.2 1048 30.7
Actinidia34683 Actinidia chinensis HOM05D004529 ORTHO05D005884 1.3e-82 312.4 1095 30.0
Dinv06405 Davidia involucrata HOM05D004529 ORTHO05D005884 1.3e-82 312.4 740 35.0
TAR629G0199 Trochodendron aralioides HOM05D004529 ORTHO05D005884 1.3e-82 312.4 958 31.2
Glyma.16G212800 Glycine max HOM05D004529 ORTHO05D005884 4.5e-80 303.9 1095 30.3
Lalb_Chr14g0370211 Lupinus albus HOM05D004529 ORTHO05D005884 2.5e-78 298.1 1094 30.3
Potri.017G152601 Populus trichocarpa HOM05D004529 ORTHO05D005884 4.2e-78 297.4 742 34.1
Lalb_Chr24g0398601 Lupinus albus HOM05D004529 ORTHO05D005884 2.1e-77 295.0 1089 29.3
Sabra17G0125600 Salix brachista HOM05D004529 ORTHO05D005884 6.1e-77 293.5 745 34.6
Glyma.09G164300 Glycine max HOM05D004529 ORTHO05D005884 2.6e-75 288.1 1101 29.3
VMungo0464G0747 Vigna mungo HOM05D004529 ORTHO05D005884 3.4e-75 287.7 1053 30.4
Phvul.004G138850 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 7.5e-75 286.6 968 30.3
VMungo0464G1978 Vigna mungo HOM05D004529 ORTHO05D005884 7.5e-75 286.6 1044 30.3
Rhsim08G0124700 Rhododendron simsii HOM05D004529 ORTHO05D005884 1.6e-72 278.9 1095 28.9
Medtr6g077930 Medicago truncatula HOM05D004529 ORTHO05D005884 1.0e-68 266.2 1077 28.9
Gorai.013G179100 Gossypium raimondii HOM05D004529 ORTHO05D005884 8.9e-68 263.1 1047 28.8
Cpa.g.sc168.9 Carica papaya HOM05D004529 ORTHO05D005884 3.4e-67 261.2 984 28.5
Lj2g0011080 Lotus japonicus HOM05D004529 ORTHO05D005884 4.9e-66 257.3 1086 29.7
Gohir.D13G158400 Gossypium hirsutum HOM05D004529 ORTHO05D005884 4.1e-65 254.2 1042 28.5
GSVIVG01024252001 Vitis vinifera HOM05D004529 ORTHO05D005884 2.7e-64 251.5 890 29.6
Psat0s1805g0040 Pisum sativum HOM05D004529 ORTHO05D005884 1.3e-63 249.2 1057 27.7
vmacro17741 Vaccinium macrocarpon HOM05D004529 ORTHO05D005884 8.6e-63 246.5 939 29.8
Ca_27163_v3 Cicer arietinum L. HOM05D004529 ORTHO05D005884 4.3e-62 244.2 1010 28.7
Lj5A167G40 Lonicera japonica HOM05D004529 ORTHO05D005884 5.2e-60 237.3 968 27.8
Gohir.D13G093200 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.0e-59 235.3 1019 28.9
Eucgr.H00653 Eucalyptus grandis HOM05D004529 ORTHO05D005884 4.4e-59 234.2 1035 27.2
Gohir.A13G089790 Gossypium hirsutum HOM05D004529 ORTHO05D005884 9.8e-59 233.0 277 46.9
RcHm_v2.0_Chr7g0177041 Rosa chinensis HOM05D004529 ORTHO05D005884 2.9e-58 231.5 432 37.3
PGR083G0180 Punica granatum HOM05D004529 ORTHO05D005884 1.1e-57 229.6 1016 29.8
arahy.Tifrunner.gnm1.ann1.1UV8VN Arachis hypogaea HOM05D004529 ORTHO05D005884 3.2e-57 228.0 1071 26.8
Gohir.A13G153800 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.3e-55 222.6 997 27.2
arahy.Tifrunner.gnm1.ann1.FEKM9F Arachis hypogaea HOM05D004529 ORTHO05D005884 8.6e-55 219.9 1066 26.1
TPR.G19877 Trifolium pratense HOM05D004529 ORTHO05D005884 1.4e-52 212.6 1072 27.4
Nitab4.5_0003040g0050 Nicotiana tabacum HOM05D004529 ORTHO05D005884 2.0e-51 208.8 655 29.2
Phvul.004G138800 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 3.4e-51 208.0 931 28.0
PGSC0003DMG400010150 Solanum tuberosum HOM05D004529 ORTHO05D005884 3.4e-51 208.0 278 42.4
CAN.G929.20 Capsicum annuum HOM05D004529 ORTHO05D005884 5.8e-51 207.2 313 39.9
MBI06_g11152_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 5.8e-51 207.2 1144 25.5
Solyc03g098630.4 Solanum lycopersicum HOM05D004529 ORTHO05D005884 9.8e-51 206.5 278 42.4
Nitab4.5_0000033g0370 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.7e-50 205.7 272 44.5
FvH4_5g18430 Fragaria vesca HOM05D004529 ORTHO05D005884 2.2e-50 205.3 444 32.2
FAN18G1654 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.2e-50 205.3 444 32.2
MBI03_g26653_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 2.9e-50 204.9 274 42.3
Sopen03g029340 Solanum pennellii HOM05D004529 ORTHO05D005884 4.9e-50 204.1 276 41.7
Peaxi162Scf00171g00234 Petunia axillaris HOM05D004529 ORTHO05D005884 1.4e-49 202.6 294 41.2
FAN08G1550 Fragaria x ananassa HOM05D004529 ORTHO05D005884 6.0e-48 197.2 508 30.7
FAN13G2071 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.0e-47 194.9 529 30.2
RcHm_v2.0_Chr1g0318131 Rosa chinensis HOM05D004529 ORTHO05D005884 1.4e-44 186.0 492 32.9
TAR627G0950 Trochodendron aralioides HOM05D004529 ORTHO05D005884 4.0e-44 184.5 294 38.8
Nitab4.5_0000339g0110 Nicotiana tabacum HOM05D004529 ORTHO05D005884 6.8e-44 183.7 228 45.6
CAN.G65.75 Capsicum annuum HOM05D004529 ORTHO05D005884 1.2e-43 183.0 263 39.9
MBI02_g39755_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 2.0e-43 182.2 411 32.6
ATR0618G236 Amborella trichopoda HOM05D004529 ORTHO05D005884 6.4e-42 177.2 269 40.1
Lj9P411T44 Lonicera japonica HOM05D004529 ORTHO05D005884 8.3e-42 176.8 345 34.2
Nitab4.5_0000782g0040 Nicotiana tabacum HOM05D004529 ORTHO05D005884 1.4e-41 176.0 631 27.4
Peaxi162Scf00643g00541 Petunia axillaris HOM05D004529 ORTHO05D005884 4.1e-41 174.5 345 35.7
CDE05G3012 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 4.6e-40 171.0 734 27.4
Haze_13045 Corylus avellana HOM05D004529 ORTHO05D005884 2.3e-39 168.7 277 37.5
MD17G1087100 Malus domestica HOM05D004529 ORTHO05D005884 8.6e-39 166.8 256 36.7
PSO541G4256 Papaver somniferum HOM05D004529 ORTHO05D005884 5.6e-38 164.1 265 38.1
PSO675G1505 Papaver somniferum HOM05D004529 ORTHO05D005884 5.6e-38 164.1 265 37.7
Lj9P233T36 Lonicera japonica HOM05D004529 ORTHO05D005884 1.2e-37 162.9 234 41.5
Prupe.3G227600 Prunus persica HOM05D004529 ORTHO05D005884 3.6e-37 161.4 264 35.6
Cfa014497 Carpinus fangiana HOM05D004529 ORTHO05D005884 1.4e-36 159.5 276 36.6
Cfa014498 Carpinus fangiana HOM05D004529 ORTHO05D005884 1.8e-36 159.1 276 36.6
Thecc.02G167600 Theobroma cacao HOM05D004529 ORTHO05D005884 3.1e-36 158.3 262 35.1
PSO782G2500 Papaver somniferum HOM05D004529 ORTHO05D005884 4.0e-36 157.9 271 38.0
DCAR_011683 Daucus carota HOM05D004529 ORTHO05D005884 1.5e-35 156.0 1044 25.1
Zm00001eb271850 Zea mays HOM05D004529 ORTHO05D005884 1.5e-35 156.0 300 34.7
PSO063G4972 Papaver somniferum HOM05D004529 ORTHO05D005884 2.6e-35 155.2 271 37.3
CDE08G0908 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 1.7e-34 152.5 328 32.6
FAN04G0338 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.9e-33 149.1 269 35.3
Zm00001eb198730 Zea mays HOM05D004529 ORTHO05D005884 5.4e-33 147.5 316 30.4
FAN09G3058 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.1e-33 147.1 263 35.0
Sopen06g028620 Solanum pennellii HOM05D004529 ORTHO05D005884 1.6e-32 146.0 261 38.7
FAN05G1920 Fragaria x ananassa HOM05D004529 ORTHO05D005884 6.0e-32 144.1 258 35.7
Sopen06g028600 Solanum pennellii HOM05D004529 ORTHO05D005884 1.0e-31 143.3 302 35.8
Os06g0729500 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 1.3e-31 142.9 838 24.8
FvH4_6g44320 Fragaria vesca HOM05D004529 ORTHO05D005884 5.1e-31 141.0 263 34.2
Atru.chr6.3093 Acer truncatum HOM05D004529 ORTHO05D005884 1.1e-30 139.8 266 35.3
FAN02G0641 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.9e-30 139.0 263 34.2
FAN14G2835 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.3e-30 138.3 265 34.0
PGSC0003DMG400045819 Solanum tuberosum HOM05D004529 ORTHO05D005884 1.3e-29 136.3 245 38.0
GSVIVG01029323001 Vitis vinifera HOM05D004529 ORTHO05D005884 2.1e-29 135.6 270 32.6
Hund01213 Selenicereus undatus HOM05D004529 ORTHO05D005884 8.1e-29 133.7 304 31.9
RcHm_v2.0_Chr2g0161201 Rosa chinensis HOM05D004529 ORTHO05D005884 2.4e-28 132.1 267 35.2
Dinv02574 Davidia involucrata HOM05D004529 ORTHO05D005884 9.0e-28 130.2 269 33.5
HPP92_022512 Vanilla planifolia HOM05D004529 ORTHO05D001371 4.6e-24 117.9 952 24.1
Sc21g0002170 Simmondsia chinensis HOM05D004529 ORTHO05D005884 1.0e-23 116.7 233 35.2
Mapoly0005s0070 Marchantia polymorpha HOM05D004529 ORTHO05D000444 1.7e-23 115.9 291 29.6
Cpa.g.sc34.61 Carica papaya HOM05D040545 ORTHO05D005884 3.0e-23 115.2 223 34.1
Sabra19G0119700 Salix brachista HOM05D004529 ORTHO05D005884 3.9e-23 114.8 247 30.4
Potri.019G119100 Populus trichocarpa HOM05D004529 ORTHO05D005884 1.9e-22 112.5 260 33.5
Sabra19G0119900 Salix brachista HOM05D004529 ORTHO05D005884 1.9e-22 112.5 247 30.8
Sabra19G0134300 Salix brachista HOM05D004529 ORTHO05D005884 1.9e-22 112.5 247 30.8
Potri.013G149400 Populus trichocarpa HOM05D004529 ORTHO05D005884 5.6e-22 110.9 260 33.1
Sabra19G0134100 Salix brachista HOM05D004529 ORTHO05D005884 5.6e-22 110.9 247 30.8
Cpa.g.sc34.58 Carica papaya HOM05D004529 ORTHO05D005884 1.1e-20 106.7 119 43.7
CDE02G2928 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 6.4e-18 97.4 227 33.5
Ciclev10018263m.g Citrus clementina HOM05D004529 ORTHO05D005884 3.2e-17 95.1 250 31.6
Nitab4.5_0011808g0010 Nicotiana tabacum HOM05D004529 ORTHO05D005884 3.2e-17 95.1 164 36.6
Dinv02572 Davidia involucrata HOM05D004529 ORTHO05D005884 3.0e-15 88.6 263 25.9
Zm00001eb261400 Zea mays HOM05D004529 ORTHO05D005884 8.1e-13 80.5 279 25.8
MELO3C035753.2 Cucumis melo HOM05D004529 ORTHO05D005884 2.9e-10 72.0 49 71.4
Gohir.A13G089745 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.5e-09 68.9 445 25.2
MELO3C013603.2 Cucumis melo HOM05D000608 ORTHO05D000444 2.7e-08 65.5 258 28.3
CsaV3_6G013090 Cucumis sativus L. HOM05D000608 ORTHO05D000444 6.0e-08 64.3 251 28.7
Dinv06404 Davidia involucrata HOM05D004529 ORTHO05D005884 6.0e-08 64.3 141 34.0
GSVIVG01000446001 Vitis vinifera HOM05D004529 ORTHO05D005884 6.7e-07 60.8 62 45.2
ClCG02G017460 Citrullus lanatus HOM05D000608 ORTHO05D000444 8.7e-07 60.5 250 28.0


User provided reference genes

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