Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 7.7e-112 407.1 203 100.0
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 7.8e-64 247.7 209 68.9
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 7.1e-57 224.6 208 61.5
MELO3C011356.2 Cucumis melo HOM05D007731 ORTHO05D008483 3.7e-37 159.1 143 59.4
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 9.3e-33 144.4 237 43.0
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 3.3e-30 136.0 245 40.4
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 7.4e-30 134.8 220 46.4
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 2.4e-28 129.8 192 44.8
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 1.0e-26 124.4 227 42.3
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 8.4e-26 121.3 219 40.2
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 9.3e-25 117.9 229 41.5
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 1.6e-24 117.1 213 43.2
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 2.7e-24 116.3 193 48.2
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 3.5e-24 115.9 233 40.8
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 6.1e-24 115.2 209 43.1
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 6.1e-24 115.2 229 38.0
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 7.9e-24 114.8 163 49.7
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 1.0e-23 114.4 212 41.0
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.8e-23 113.6 202 41.1
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.9e-23 112.5 221 40.7
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 6.7e-23 111.7 208 43.3
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 6.7e-23 111.7 228 37.3
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 1.9e-22 110.2 212 41.0
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 1.9e-22 110.2 216 41.7
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 4.3e-22 109.0 216 41.7
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 5.7e-22 108.6 217 40.6
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.4e-22 108.2 183 45.9
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 1.3e-21 107.5 139 48.2
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.6e-21 107.1 185 46.5
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 2.2e-21 106.7 191 41.9
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 2.2e-21 106.7 230 39.6
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.7e-21 105.9 225 40.0
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 3.7e-21 105.9 234 39.7
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 3.7e-21 105.9 205 39.5
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 4.8e-21 105.5 226 40.7
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 4.8e-21 105.5 192 39.6
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 6.3e-21 105.1 175 48.0
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 6.3e-21 105.1 195 42.1
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 4.1e-20 102.4 243 35.8
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.2e-19 100.9 199 40.2
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.4e-19 99.4 241 36.9
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 5.9e-19 98.6 226 38.1
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.3e-18 97.4 221 38.0
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.3e-18 97.4 223 37.2
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.3e-18 97.4 176 41.5
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 1.7e-18 97.1 207 39.6
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.9e-18 96.3 223 38.6
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 3.8e-18 95.9 224 37.9
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 6.5e-18 95.1 226 37.6
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 8.5e-18 94.7 241 36.5
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 1.4e-17 94.0 223 37.7
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.2e-16 90.9 198 37.9
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 1.6e-16 90.5 183 40.4
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 2.7e-16 89.7 175 40.0
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.3e-15 86.7 193 38.9
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.3e-15 86.7 193 38.9
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 8.8e-15 84.7 210 35.2
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 8.8e-15 84.7 210 35.2
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 2.0e-14 83.6 235 38.3
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 2.5e-14 83.2 220 34.5
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 5.7e-14 82.0 184 38.0
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.4e-14 81.6 183 36.6
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 9.7e-14 81.3 212 32.5
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 1.3e-13 80.9 184 38.6
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.7e-13 80.5 180 35.0
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 1.7e-13 80.5 124 46.0
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 1.7e-13 80.5 161 38.5
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 4.8e-13 79.0 268 31.7
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.1e-12 77.8 198 34.3
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.4e-12 77.4 219 31.5
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 1.8e-12 77.0 222 31.5
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 1.8e-12 77.0 124 42.7
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 3.1e-12 76.3 169 39.6
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 5.3e-12 75.5 190 38.4
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 1.5e-11 73.9 202 34.7
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 5.9e-11 72.0 170 36.5
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 7.7e-11 71.6 201 33.3
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 8.5e-10 68.2 69 47.8
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 8.5e-10 68.2 92 48.9
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 1.1e-09 67.8 153 39.2
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 1.1e-09 67.8 146 37.7
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 2.5e-09 66.6 141 37.6
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 1.2e-08 64.3 160 34.4
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 1.6e-08 63.9 92 46.7
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 2.1e-08 63.5 94 42.6
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 6.1e-08 62.0 98 44.9
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 1.0e-07 61.2 92 41.3
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.4e-07 60.8 103 41.7
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.8e-07 60.5 91 44.0
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 2.3e-07 60.1 108 38.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.3e-07 60.1 148 37.2
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 3.0e-07 59.7 193 35.8
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 3.9e-07 59.3 93 43.0
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 5.1e-07 58.9 94 41.5
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 5.1e-07 58.9 94 41.5
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 8.8e-07 58.2 63 47.6
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.1e-06 57.8 57 66.7
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.5e-06 57.4 92 41.3
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 2.0e-06 57.0 58 65.5
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 2.0e-06 57.0 187 31.0
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 2.6e-06 56.6 63 46.0
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 2.6e-06 56.6 58 62.1
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 2.6e-06 56.6 115 37.4
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 2.6e-06 56.6 86 45.3
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.3e-06 56.2 124 40.3
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 3.3e-06 56.2 89 42.7
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.3e-06 56.2 93 40.9
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.3e-06 56.2 93 40.9
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.3e-06 56.2 92 42.4
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.3e-06 56.2 160 33.1
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 4.4e-06 55.8 109 40.4
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 4.4e-06 55.8 205 31.7
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.4e-06 55.8 189 33.3
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 5.7e-06 55.5 183 33.3
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 5.7e-06 55.5 117 36.8
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 7.4e-06 55.1 45 62.2
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 7.4e-06 55.1 92 41.3
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 7.4e-06 55.1 87 43.7
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 7.4e-06 55.1 87 43.7
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 7.4e-06 55.1 87 43.7
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 7.4e-06 55.1 87 43.7
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 9.7e-06 54.7 88 42.0


User provided reference genes

Program Settings