Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 3.2e-77 291.6 138 100.0
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 1.1e-45 186.8 106 77.4
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 8.0e-44 180.6 99 79.8
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 8.0e-44 180.6 99 81.8
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 1.8e-43 179.5 99 79.8
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 1.2e-42 176.8 99 77.8
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.0e-42 176.0 99 76.8
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 2.6e-42 175.6 99 77.8
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 3.4e-42 175.3 99 75.8
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 4.4e-42 174.9 99 75.8
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 5.7e-42 174.5 99 76.8
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 9.8e-42 173.7 99 76.8
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 1.3e-41 173.3 99 75.8
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 2.2e-41 172.6 99 76.8
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 4.8e-41 171.4 98 76.5
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 6.3e-41 171.0 99 76.8
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 6.3e-41 171.0 99 73.7
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 8.3e-41 170.6 99 74.7
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 8.3e-41 170.6 97 75.3
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.4e-40 169.9 99 77.8
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 1.8e-40 169.5 99 74.7
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 4.1e-40 168.3 98 74.5
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 4.1e-40 168.3 99 72.7
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 7.0e-40 167.5 99 74.7
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 1.2e-39 166.8 99 72.7
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 1.2e-39 166.8 99 72.7
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 1.2e-39 166.8 99 73.7
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 1.2e-39 166.8 99 73.7
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 1.2e-39 166.8 99 74.7
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 1.2e-39 166.8 99 73.7
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 1.6e-39 166.4 99 74.7
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 1.6e-39 166.4 99 72.7
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.0e-39 166.0 99 76.8
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 2.7e-39 165.6 99 71.7
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 3.5e-39 165.2 99 73.7
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 4.5e-39 164.9 99 69.7
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 4.5e-39 164.9 99 71.7
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 5.9e-39 164.5 99 71.7
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 5.9e-39 164.5 93 74.2
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 7.7e-39 164.1 99 70.7
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 7.7e-39 164.1 97 74.2
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 1.0e-38 163.7 98 69.4
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 1.0e-38 163.7 95 72.6
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 1.0e-38 163.7 98 70.4
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 1.3e-38 163.3 99 70.7
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 1.3e-38 163.3 99 71.7
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 1.3e-38 163.3 99 70.7
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 1.7e-38 162.9 99 69.7
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 2.2e-38 162.5 99 70.7
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 2.2e-38 162.5 97 72.2
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 2.9e-38 162.2 97 70.1
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 6.5e-38 161.0 99 68.7
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 1.1e-37 160.2 98 70.4
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 1.1e-37 160.2 99 69.7
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 1.5e-37 159.8 99 70.7
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 1.5e-37 159.8 95 72.6
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 1.9e-37 159.5 100 73.0
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 1.9e-37 159.5 99 72.7
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 1.9e-37 159.5 98 69.4
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 2.5e-37 159.1 99 70.7
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 3.2e-37 158.7 99 69.7
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 3.2e-37 158.7 99 68.7
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 4.2e-37 158.3 94 72.3
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 5.5e-37 157.9 97 69.1
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 5.5e-37 157.9 97 69.1
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 7.2e-37 157.5 99 69.7
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 7.2e-37 157.5 99 65.7
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 2.7e-36 155.6 99 66.7
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 3.6e-36 155.2 118 61.0
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 3.6e-36 155.2 97 67.0
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 6.1e-36 154.5 96 66.7
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 6.1e-36 154.5 97 67.0
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 6.1e-36 154.5 98 66.3
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 8.0e-36 154.1 97 67.0
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 1.4e-35 153.3 97 64.9
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 1.8e-35 152.9 97 64.9
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.8e-35 152.9 97 64.9
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 1.8e-35 152.9 96 67.7
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 2.3e-35 152.5 97 64.9
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 3.0e-35 152.1 99 64.6
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 3.0e-35 152.1 99 64.6
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 8.8e-35 150.6 99 67.7
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 8.8e-35 150.6 99 68.7
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 1.5e-34 149.8 100 67.0
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 2.0e-34 149.4 95 66.3
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 2.6e-34 149.1 97 63.9
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 3.4e-34 148.7 97 64.9
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 1.7e-33 146.4 98 65.3
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 2.8e-33 145.6 90 71.1
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 4.9e-33 144.8 97 64.9
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 2.4e-32 142.5 98 64.3
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 1.3e-30 136.7 116 53.4
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 1.6e-28 129.8 80 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 6.8e-27 124.4 93 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 2.0e-26 122.9 93 59.1
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 4.4e-26 121.7 100 50.0
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 2.3e-22 109.4 88 52.3
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 6.6e-22 107.8 88 51.1
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.1e-21 107.1 98 49.0
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 2.5e-21 105.9 93 48.4
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 5.4e-16 88.2 99 46.5
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 2.3e-14 82.8 85 42.4
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 2.6e-10 69.3 85 38.8
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 7.5e-10 67.8 107 33.6
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 7.5e-10 67.8 87 37.9
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 7.5e-10 67.8 87 40.2
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 1.3e-09 67.0 87 40.2
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.7e-09 66.6 105 34.3
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 2.2e-09 66.2 87 40.2
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 2.2e-09 66.2 87 40.2
AagrBONN_evm.TU.Sc2ySwM_362.2682 Anthoceros agrestis HOM05D003340 ORTHO05D003775 2.9e-09 65.9 86 34.9
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 2.9e-09 65.9 87 37.9
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 2.9e-09 65.9 87 37.9
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 4.9e-09 65.1 84 35.7
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 8.3e-09 64.3 97 36.1
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 1.1e-08 63.9 87 36.8
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 1.1e-08 63.9 87 35.6
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 1.4e-08 63.5 112 33.0
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 1.4e-08 63.5 87 39.1
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 1.4e-08 63.5 116 33.6
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.4e-08 63.5 90 36.7
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 2.4e-08 62.8 87 35.6
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.4e-08 62.8 87 35.6
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.2e-08 62.4 101 36.6
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 3.2e-08 62.4 112 34.8
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 5.4e-08 61.6 109 30.3
PGR102G2107 Punica granatum HOM05D003340 ORTHO05D003775 5.4e-08 61.6 106 35.8
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 9.2e-08 60.8 101 35.6
Solyc06g048850.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 9.2e-08 60.8 85 36.5
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 1.2e-07 60.5 108 32.4
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 1.2e-07 60.5 101 32.7
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 1.2e-07 60.5 84 35.7
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 1.6e-07 60.1 87 36.8
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 1.6e-07 60.1 101 35.6
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.1e-07 59.7 101 34.7
Hund21783 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.7e-07 59.3 86 32.6
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 4.6e-07 58.5 86 34.9
Migut.C01126 Erythranthe guttata HOM05D003340 ORTHO05D003775 4.6e-07 58.5 99 34.3
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 4.6e-07 58.5 136 28.7
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 6.0e-07 58.2 94 35.1
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 7.8e-07 57.8 123 34.1
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 1.0e-06 57.4 90 33.3
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 1.0e-06 57.4 86 33.7
TWI74G0103 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 1.0e-06 57.4 87 32.2
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-06 57.0 127 32.3
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 1.3e-06 57.0 87 35.6
Lalb_Chr11g0065901 Lupinus albus HOM05D003340 ORTHO05D003775 1.7e-06 56.6 86 34.9
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 1.7e-06 56.6 100 30.0
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 1.7e-06 56.6 87 35.6
Zm00001eb368310 Zea mays HOM05D003340 ORTHO05D003775 2.3e-06 56.2 85 31.8
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 3.0e-06 55.8 89 36.0
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 3.9e-06 55.5 83 32.5
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 5.1e-06 55.1 91 35.2
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 5.1e-06 55.1 86 33.7
Sopen06g015140 Solanum pennellii HOM05D003340 ORTHO05D003775 5.1e-06 55.1 85 34.1
Lalb_Chr07g0184161 Lupinus albus HOM05D003340 ORTHO05D003775 6.6e-06 54.7 112 33.0
SGA_v2.0_scaffold120G33021 Striga asiatica HOM05D003340 ORTHO05D003775 6.6e-06 54.7 97 37.1
Hma1.2p1_0619F.1_g190390 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 8.6e-06 54.3 86 34.9
Nn3g19971 Nelumbo nucifera HOM05D003340 ORTHO05D003775 8.6e-06 54.3 81 32.1


User provided reference genes

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