Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.7e-48 194.9 91 100.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 9.3e-41 169.9 91 86.8
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.2e-40 169.5 91 86.8
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 4.3e-38 161.0 85 83.5
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.3e-37 159.5 87 81.6
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.6e-37 159.1 90 80.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.8e-37 158.3 92 79.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.8e-37 158.3 92 78.3
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.2e-37 157.1 90 78.9
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 6.2e-37 157.1 89 78.7
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.1e-36 156.4 90 78.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.4e-36 156.0 90 77.8
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.4e-36 156.0 89 77.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.4e-36 156.0 90 78.9
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.4e-36 155.2 77 85.7
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.4e-36 155.2 77 85.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 3.1e-36 154.8 90 77.8
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 3.1e-36 154.8 90 76.7
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 4.0e-36 154.5 76 86.8
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.0e-36 154.5 90 76.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 4.0e-36 154.5 91 78.0
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 5.3e-36 154.1 89 80.9
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 5.3e-36 154.1 90 80.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 5.3e-36 154.1 89 77.5
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.3e-36 154.1 80 83.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 6.9e-36 153.7 93 76.3
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 6.9e-36 153.7 90 78.9
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 9.0e-36 153.3 90 78.9
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.2e-35 152.9 76 86.8
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.0e-35 152.1 90 77.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 90 78.9
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.0e-35 152.1 87 78.2
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 85 77.6
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 85 77.6
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.0e-35 152.1 89 78.7
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.6e-35 151.8 89 76.4
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 3.4e-35 151.4 90 77.8
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.4e-35 151.4 89 74.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 4.5e-35 151.0 86 80.2
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 4.5e-35 151.0 85 76.5
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 5.8e-35 150.6 90 77.8
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 5.8e-35 150.6 91 75.8
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 5.8e-35 150.6 83 80.7
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 7.6e-35 150.2 89 78.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 9.9e-35 149.8 90 75.6
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 9.9e-35 149.8 77 81.8
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 9.9e-35 149.8 79 79.7
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.7e-34 149.1 90 74.4
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.7e-34 149.1 89 75.3
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.7e-34 149.1 79 83.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 2.9e-34 148.3 83 79.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.9e-34 148.3 90 74.4
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.9e-34 148.3 79 81.0
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 2.9e-34 148.3 90 74.4
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 4.9e-34 147.5 75 85.3
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 4.9e-34 147.5 84 78.6
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 6.4e-34 147.1 82 78.0
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.4e-34 146.7 82 78.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.1e-33 146.4 87 77.0
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.9e-33 145.6 86 77.9
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 4.2e-33 144.4 77 80.5
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 7.1e-33 143.7 87 74.7
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 7.1e-33 143.7 91 74.7
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 9.3e-33 143.3 80 77.5
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 9.3e-33 143.3 91 74.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.2e-32 142.9 88 72.7
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.2e-32 142.9 76 77.6
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.6e-32 142.5 91 70.3
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.1e-32 142.1 77 77.9
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 2.7e-32 141.7 91 72.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 7.9e-32 140.2 90 70.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.3e-31 139.4 78 78.2
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.0e-31 138.3 97 71.1
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.0e-31 138.3 90 66.7
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.0e-31 138.3 90 71.1
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.3e-29 132.9 97 68.0
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.3e-29 132.9 76 73.7
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 7.6e-27 123.6 140 48.6
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.0e-26 123.2 139 46.8
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.4e-25 119.4 199 38.2
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.6e-21 105.9 82 62.2
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.7e-18 95.9 76 56.6
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 7.2e-17 90.5 40 95.0
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 3.6e-16 88.2 42 88.1
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.5e-14 82.0 39 84.6
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.5e-14 82.0 52 71.2
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.3e-14 81.6 39 87.2
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.7e-13 79.3 42 76.2
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 3.1e-12 75.1 51 66.7
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 2.6e-11 72.0 51 64.7
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.5e-11 71.2 51 64.7
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.7e-10 69.3 40 72.5
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 4.2e-09 64.7 48 62.5
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 7.2e-09 63.9 30 90.0
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 4.7e-08 61.2 80 38.8
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 3.9e-07 58.2 80 40.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 3.9e-07 58.2 90 36.7
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.1e-07 57.8 80 38.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 5.1e-07 57.8 80 37.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 6.7e-07 57.4 80 37.5
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 8.8e-07 57.0 78 37.2
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.1e-06 56.6 80 36.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 35.4
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.1e-06 56.6 80 37.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.1e-06 56.6 80 37.5
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.5e-06 56.2 89 34.8
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 2.0e-06 55.8 78 35.9
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 2.0e-06 55.8 80 36.2
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.0e-06 55.8 80 36.2
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.0e-06 55.8 89 36.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.6e-06 55.5 80 36.2
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.6e-06 55.5 88 35.2
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 3.3e-06 55.1 90 34.4
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 3.3e-06 55.1 90 34.4
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.3e-06 55.1 80 36.2
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.3e-06 55.1 79 35.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.3e-06 55.1 80 37.5
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 4.4e-06 54.7 80 35.0
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 4.4e-06 54.7 80 36.2
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.4e-06 54.7 80 36.2
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 4.4e-06 54.7 89 36.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.4e-06 54.7 83 34.9
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 4.4e-06 54.7 92 34.8
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.4e-06 54.7 80 36.2
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.7e-06 54.3 82 34.1
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 5.7e-06 54.3 88 35.2
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 5.7e-06 54.3 88 33.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 5.7e-06 54.3 88 33.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 7.4e-06 53.9 80 36.2
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 7.4e-06 53.9 88 31.8
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 9.7e-06 53.5 87 33.3
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 9.7e-06 53.5 78 35.9
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 9.7e-06 53.5 80 35.0
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 9.7e-06 53.5 88 30.7


User provided reference genes

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