Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 0.0e+00 1077.0 570 100.0
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 2.5e-269 931.8 581 85.5
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 1.3e-262 909.4 581 83.6
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 9.7e-229 797.0 545 80.2
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 1.5e-213 746.5 604 68.9
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.7e-212 743.0 583 68.3
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 1.1e-211 740.3 575 69.9
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 7.0e-211 737.6 574 69.9
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 5.9e-210 734.6 572 69.9
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 2.7e-207 725.7 581 68.8
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 1.2e-205 720.3 595 67.6
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 1.8e-203 713.0 579 67.2
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 4.5e-202 708.4 589 66.6
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 1.3e-201 706.8 576 66.0
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 1.7e-201 706.4 587 67.1
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 2.9e-201 705.7 548 69.5
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 3.8e-201 705.3 547 69.5
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 5.0e-201 704.9 587 67.3
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 8.6e-201 704.1 587 67.0
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 8.6e-201 704.1 568 68.0
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 3.3e-200 702.2 639 62.1
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 1.2e-199 700.3 521 71.6
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.3e-196 690.3 530 69.8
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.7e-196 689.9 558 65.6
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 8.3e-196 687.6 578 65.7
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.1e-195 687.2 530 69.6
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 3.2e-195 685.6 589 64.0
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.2e-194 683.7 576 66.3
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 2.0e-194 682.9 513 69.4
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 2.7e-194 682.6 511 69.7
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 3.5e-194 682.2 543 68.1
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 1.3e-193 680.2 508 69.5
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 1.7e-193 679.9 508 69.7
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 2.3e-193 679.5 508 69.7
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 2.3e-193 679.5 576 64.6
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 3.9e-193 678.7 577 65.7
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 3.3e-192 675.6 568 64.4
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 7.3e-192 674.5 574 64.1
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 1.6e-191 673.3 513 69.2
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 6.2e-191 671.4 570 64.7
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 3.1e-190 669.1 535 66.7
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 4.0e-190 668.7 576 62.7
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 5.2e-190 668.3 591 61.9
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 8.9e-190 667.5 579 64.4
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 7.5e-189 664.5 517 66.7
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 1.7e-188 663.3 509 68.8
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 2.9e-188 662.5 499 69.3
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 4.9e-188 661.8 509 68.0
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 4.9e-188 661.8 490 69.8
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 1.9e-187 659.8 523 67.5
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 2.4e-187 659.4 509 67.8
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 2.7e-186 656.0 537 64.4
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 7.8e-186 654.4 508 68.5
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 2.3e-185 652.9 560 61.6
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 1.6e-183 646.7 523 67.1
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 3.6e-183 645.6 551 63.7
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 4.7e-183 645.2 579 60.6
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 4.0e-182 642.1 509 65.6
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 4.0e-182 642.1 482 68.5
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 6.8e-182 641.3 534 66.7
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 3.4e-181 639.0 560 61.6
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 3.4e-181 639.0 546 63.0
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 1.6e-178 630.2 492 67.3
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 4.6e-178 628.6 586 60.8
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 3.9e-177 625.5 578 61.1
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 8.6e-177 624.4 572 60.5
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 5.6e-176 621.7 614 57.5
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 9.5e-176 620.9 450 72.9
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 2.8e-175 619.4 538 62.1
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 5.8e-173 611.7 494 65.4
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 7.6e-173 611.3 460 69.6
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 9.2e-171 604.4 528 62.1
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 2.5e-168 596.3 624 56.6
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 6.4e-164 581.6 571 58.7
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.4e-163 580.5 655 53.9
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 5.4e-163 578.6 481 64.9
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 9.3e-163 577.8 592 55.1
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 1.0e-161 574.3 537 58.3
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 1.4e-158 563.9 528 58.9
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 4.0e-158 562.4 522 59.8
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 5.8e-157 558.5 479 62.4
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 2.7e-154 549.7 509 57.0
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 5.1e-153 545.4 533 59.3
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 1.1e-152 544.3 525 57.3
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 1.4e-150 537.3 477 62.3
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 8.4e-148 528.1 547 55.8
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.2e-147 526.2 521 57.4
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 8.2e-135 485.0 630 50.3
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 2.4e-134 483.4 572 48.8
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 5.3e-134 482.3 523 49.7
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 1.1e-126 458.0 491 49.7
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 2.5e-123 446.8 322 72.4
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 1.8e-121 440.7 325 71.1
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 1.7e-116 424.1 507 48.1
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 3.6e-114 416.4 380 56.1
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 5.9e-101 372.5 514 44.6
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 1.6e-82 311.2 226 72.1
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.4e-65 255.0 256 59.8
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 4.1e-62 243.4 274 55.8
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 6.6e-60 236.1 219 57.5
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 5.2e-57 226.5 563 32.5
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 4.1e-54 216.9 275 48.4
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.9e-51 208.0 214 54.2
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.8e-49 201.4 199 50.8
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 2.6e-48 197.6 182 55.5
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 2.7e-45 187.6 138 73.2
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 4.6e-37 160.2 237 44.7
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 6.9e-33 146.4 171 48.5
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.5e-27 128.6 109 62.4
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 5.7e-19 100.1 71 77.5
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.5e-14 84.7 63 74.6
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 4.5e-08 63.9 117 36.8
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 2.9e-07 61.2 117 35.0


User provided reference genes

Program Settings