Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013115 Sechium edule HOM05D000665 ORTHO05D000140 2.0e-77 292.4 148 100.0
Sed0010676 Sechium edule HOM05D000218 ORTHO05D000125 2.3e-49 199.1 149 71.8
Sed0020609 Sechium edule HOM05D000665 ORTHO05D000140 9.2e-22 107.5 75 74.7
MELO3C025416.2 Cucumis melo HOM05D000665 ORTHO05D000140 5.6e-11 71.6 72 52.8
Duzib138G0087 Durio zibethinus HOM05D000665 ORTHO05D000140 6.2e-10 68.2 65 49.2
COL.COLO4_23291 Corchorus olitorius HOM05D000665 ORTHO05D000140 8.1e-10 67.8 64 50.0
Dinv33085 Davidia involucrata HOM05D000665 ORTHO05D000140 8.1e-10 67.8 65 47.7
Manes.05G000700 Manihot esculenta HOM05D000665 ORTHO05D000140 8.1e-10 67.8 62 50.0
Thecc.01G307300 Theobroma cacao HOM05D000665 ORTHO05D000140 8.1e-10 67.8 65 50.8
ClCG09G005450 Citrullus lanatus HOM05D000665 ORTHO05D000140 1.1e-09 67.4 64 48.4
Lj1g0017274 Lotus japonicus HOM05D000665 ORTHO05D000140 1.1e-09 67.4 66 50.0
Atru.chr5.1075 Acer truncatum HOM05D000665 ORTHO05D000140 1.4e-09 67.0 61 52.5
Haze_04987 Corylus avellana HOM05D000665 ORTHO05D000140 1.4e-09 67.0 65 46.2
Hma1.2p1_0969F.1_g242610 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 1.8e-09 66.6 65 49.2
Prupe.8G268300 Prunus persica HOM05D000665 ORTHO05D000140 1.8e-09 66.6 63 49.2
CSS0030989 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 2.4e-09 66.2 66 47.0
CSS0031710 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 2.4e-09 66.2 66 47.0
GSVIVG01028065001 Vitis vinifera HOM05D000665 ORTHO05D000140 2.4e-09 66.2 66 47.0
Ciclev10019662m.g Citrus clementina HOM05D000665 ORTHO05D000140 3.1e-09 65.9 59 52.5
CsaV3_7G029640 Cucumis sativus L. HOM05D000665 ORTHO05D000140 3.1e-09 65.9 64 46.9
QL12p028664 Quercus lobata HOM05D000665 ORTHO05D000140 3.1e-09 65.9 64 48.4
CiPaw.07G113300 Carya illinoinensis HOM05D000665 ORTHO05D000140 4.0e-09 65.5 64 46.9
MELO3C015957.2 Cucumis melo HOM05D000665 ORTHO05D000140 4.0e-09 65.5 64 46.9
Prupe.1G395600 Prunus persica HOM05D000665 ORTHO05D000140 4.0e-09 65.5 67 44.8
arahy.Tifrunner.gnm1.ann1.AKJ706 Arachis hypogaea HOM05D000665 ORTHO05D000140 8.9e-09 64.3 66 48.5
arahy.Tifrunner.gnm1.ann1.Y7W5CB Arachis hypogaea HOM05D000665 ORTHO05D000140 8.9e-09 64.3 66 48.5
TWI59G0074 Tripterygium wilfordii HOM05D000665 ORTHO05D000140 8.9e-09 64.3 61 49.2
HanXRQChr10g0285541 Helianthus annuus HOM05D000665 ORTHO05D000140 1.2e-08 63.9 64 45.3
GSVIVG01035986001 Vitis vinifera HOM05D000665 ORTHO05D000140 1.2e-08 63.9 65 46.2
MD03G1298700 Malus domestica HOM05D000665 ORTHO05D000140 1.5e-08 63.5 63 47.6
Sed0002116 Sechium edule HOM05D000665 ORTHO05D000140 1.5e-08 63.5 63 46.0
THA.LOC104825955 Tarenaya hassleriana HOM05D000665 ORTHO05D000140 1.5e-08 63.5 59 49.2
Lj2A1201T49 Lonicera japonica HOM05D000665 ORTHO05D000140 2.0e-08 63.2 64 45.3
TAR362G0679 Trochodendron aralioides HOM05D000665 ORTHO05D000140 2.0e-08 63.2 65 46.2
Dinv11881 Davidia involucrata HOM05D000665 ORTHO05D000140 2.6e-08 62.8 57 52.6
Gorai.004G051400 Gossypium raimondii HOM05D000665 ORTHO05D000140 2.6e-08 62.8 65 44.6
Lsat_1_v5_gn_9_440 Lactuca sativa HOM05D000665 ORTHO05D000140 2.6e-08 62.8 64 43.8
Potri.002G200600 Populus trichocarpa HOM05D000665 ORTHO05D000140 2.6e-08 62.8 62 45.2
Cpa.g.sc151.40 Carica papaya HOM05D000665 ORTHO05D000140 3.4e-08 62.4 63 44.4
Gohir.A08G041433 Gossypium hirsutum HOM05D000665 ORTHO05D000140 3.4e-08 62.4 65 44.6
QL07p026924 Quercus lobata HOM05D000665 ORTHO05D000140 3.4e-08 62.4 65 46.2
Sabra02G0158000 Salix brachista HOM05D000665 ORTHO05D000140 3.4e-08 62.4 59 47.5
vmacro15129 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 3.4e-08 62.4 63 46.0
Actinidia25828 Actinidia chinensis HOM05D000665 ORTHO05D000140 4.4e-08 62.0 65 44.6
Eucgr.C04039 Eucalyptus grandis HOM05D000665 ORTHO05D000140 4.4e-08 62.0 56 48.2
Prupe.7G091300 Prunus persica HOM05D000665 ORTHO05D000140 4.4e-08 62.0 57 49.1
ClCG05G016170 Citrullus lanatus HOM05D000665 ORTHO05D000140 5.8e-08 61.6 58 48.3
Eucgr.H01077 Eucalyptus grandis HOM05D000665 ORTHO05D000140 5.8e-08 61.6 64 43.8
Hma1.2p1_0494F.1_g165560 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 5.8e-08 61.6 57 49.1
PGR119G2072 Punica granatum HOM05D000665 ORTHO05D000140 5.8e-08 61.6 57 47.4
Rhsim01G0288300 Rhododendron simsii HOM05D000665 ORTHO05D000140 5.8e-08 61.6 65 43.1
TWI34G1677 Tripterygium wilfordii HOM05D000665 ORTHO05D000140 5.8e-08 61.6 70 40.0
Aqoxy2G02851 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 7.6e-08 61.2 68 42.6
MELO3C016950.2 Cucumis melo HOM05D000665 ORTHO05D000140 9.9e-08 60.8 58 48.3
CsaV3_4G036440 Cucumis sativus L. HOM05D000665 ORTHO05D000140 9.9e-08 60.8 58 48.3
Gohir.D08G051354 Gossypium hirsutum HOM05D000665 ORTHO05D000140 9.9e-08 60.8 65 43.1
Gohir.D08G051400 Gossypium hirsutum HOM05D000665 ORTHO05D000140 9.9e-08 60.8 65 43.1
CANSAT64G1510 Cannabis sativa HOM05D000665 ORTHO05D000140 1.3e-07 60.5 55 45.5
Carub.0006s3495 Capsella rubella HOM05D000665 ORTHO05D000140 1.3e-07 60.5 59 44.1
CsaV3_3G005390 Cucumis sativus L. HOM05D000218 ORTHO05D000125 1.3e-07 60.5 137 30.7
Dinv25068 Davidia involucrata HOM05D000665 ORTHO05D000140 1.3e-07 60.5 60 48.3
Lalb_Chr04g0259891 Lupinus albus HOM05D000665 ORTHO05D000140 1.3e-07 60.5 64 46.9
Sed0012912 Sechium edule HOM05D000665 ORTHO05D000140 1.3e-07 60.5 58 46.6
CSS0040410 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 1.7e-07 60.1 63 46.0
TAR383G0921 Trochodendron aralioides HOM05D000665 ORTHO05D000140 1.7e-07 60.1 57 47.4
VMungo1383G3280 Vigna mungo HOM05D000665 ORTHO05D000140 1.7e-07 60.1 55 50.9
COL.COLO4_29519 Corchorus olitorius HOM05D000665 ORTHO05D000140 2.2e-07 59.7 64 45.3
Glyma.03G217200 Glycine max HOM05D000665 ORTHO05D000140 2.2e-07 59.7 57 49.1
CANSAT25G3151 Cannabis sativa HOM05D000665 ORTHO05D000140 2.9e-07 59.3 68 42.6
Hma1.2p1_0979F.1_g243550 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 2.9e-07 59.3 69 40.6
Nn1g01996 Nelumbo nucifera HOM05D000665 ORTHO05D000140 2.9e-07 59.3 63 41.3
Potri.006G265900 Populus trichocarpa HOM05D000665 ORTHO05D000140 2.9e-07 59.3 66 43.9
CANSAT64G0977 Cannabis sativa HOM05D000665 ORTHO05D000140 3.8e-07 58.9 68 42.6
Glyma.02G193300 Glycine max HOM05D000665 ORTHO05D000140 3.8e-07 58.9 55 47.3
Sp6g02110 Schrenkiella parvula HOM05D000665 ORTHO05D000140 3.8e-07 58.9 59 42.4
Glyma.10G083600 Glycine max HOM05D000665 ORTHO05D000140 4.9e-07 58.5 55 47.3
Phvul.001G210700 Phaseolus vulgaris HOM05D000665 ORTHO05D000140 4.9e-07 58.5 54 50.0
Thecc.05G108300 Theobroma cacao HOM05D000665 ORTHO05D000140 4.9e-07 58.5 64 45.3
BraA04t17527Z Brassica rapa HOM05D000665 ORTHO05D000140 6.4e-07 58.2 62 43.5
Lj1g0016372 Lotus japonicus HOM05D000665 ORTHO05D000140 6.4e-07 58.2 53 49.1
MD14G1042600 Malus domestica HOM05D000665 ORTHO05D000140 6.4e-07 58.2 57 45.6
MD15G1042400 Malus domestica HOM05D000665 ORTHO05D000140 6.4e-07 58.2 66 40.9
Phvul.007G266500 Phaseolus vulgaris HOM05D000665 ORTHO05D000140 6.4e-07 58.2 55 47.3
Actinidia03865 Actinidia chinensis HOM05D000665 ORTHO05D000140 8.4e-07 57.8 65 43.1
Actinidia03973 Actinidia chinensis HOM05D000665 ORTHO05D000140 8.4e-07 57.8 65 43.1
Aa31LG5G1880 Aethionema arabicum HOM05D000665 ORTHO05D000140 8.4e-07 57.8 62 40.3
AT4G02210 Arabidopsis thaliana HOM05D000665 ORTHO05D000140 8.4e-07 57.8 59 40.7
MSTRG.18129 Avicennia marina HOM05D000665 ORTHO05D000140 8.4e-07 57.8 70 41.4
Lj1g0008089 Lotus japonicus HOM05D000665 ORTHO05D000140 8.4e-07 57.8 64 39.1
Nn1g08682 Nelumbo nucifera HOM05D000665 ORTHO05D000140 8.4e-07 57.8 64 45.3
Nn2g14028 Nelumbo nucifera HOM05D000665 ORTHO05D000140 8.4e-07 57.8 60 43.3
Sabra06G0208500 Salix brachista HOM05D000665 ORTHO05D000140 8.4e-07 57.8 66 42.4
AL4G16040 Arabidopsis lyrata HOM05D000665 ORTHO05D000140 1.1e-06 57.4 50 52.0
BcaB05g23607 Brassica carinata HOM05D000665 ORTHO05D000140 1.1e-06 57.4 58 41.4
A02p24550 Brassica napus HOM05D000665 ORTHO05D000140 1.1e-06 57.4 58 41.4
A04p19300 Brassica napus HOM05D000665 ORTHO05D000140 1.1e-06 57.4 57 45.6
BraA02t07447Z Brassica rapa HOM05D000665 ORTHO05D000140 1.1e-06 57.4 58 41.4
Nn3g19280 Nelumbo nucifera HOM05D000665 ORTHO05D000140 1.1e-06 57.4 54 44.4
Atru.chr7.2549 Acer truncatum HOM05D000665 ORTHO05D000140 1.4e-06 57.0 67 41.8
BolC4t27021H Brassica oleracea HOM05D000665 ORTHO05D000140 1.4e-06 57.0 53 47.2
CARHR116760 Cardamine hirsuta HOM05D000665 ORTHO05D000140 1.4e-06 57.0 50 54.0
Thhalv10028655m.g Eutrema salsugineum HOM05D000665 ORTHO05D000140 1.4e-06 57.0 59 40.7
Manes.16G131100 Manihot esculenta HOM05D000665 ORTHO05D000140 1.4e-06 57.0 59 44.1
PSO170G6184 Papaver somniferum HOM05D000665 ORTHO05D000140 1.4e-06 57.0 62 43.5
PSO782G0347 Papaver somniferum HOM05D000665 ORTHO05D000140 1.4e-06 57.0 62 41.9
BcaC02g08393 Brassica carinata HOM05D000665 ORTHO05D000140 1.9e-06 56.6 60 43.3
C04p54760 Brassica napus HOM05D000665 ORTHO05D000140 1.9e-06 56.6 60 43.3
CARHR250430 Cardamine hirsuta HOM05D000665 ORTHO05D000140 1.9e-06 56.6 50 48.0
Haze_20106 Corylus avellana HOM05D000665 ORTHO05D000140 1.9e-06 56.6 66 39.4
Gohir.A05G060500 Gossypium hirsutum HOM05D000665 ORTHO05D000140 1.9e-06 56.6 64 40.6
Gohir.D05G062750 Gossypium hirsutum HOM05D000653 ORTHO05D002177 1.9e-06 56.6 64 40.6
Gorai.009G063800 Gossypium raimondii HOM05D000653 ORTHO05D002177 1.9e-06 56.6 64 40.6
Lalb_Chr11g0063491 Lupinus albus HOM05D000665 ORTHO05D000140 1.9e-06 56.6 61 41.0
Medtr1g055365 Medicago truncatula HOM05D000665 ORTHO05D000140 1.9e-06 56.6 53 45.3
Sp4g03950 Schrenkiella parvula HOM05D000665 ORTHO05D000140 1.9e-06 56.6 53 47.2
AL6G50920 Arabidopsis lyrata HOM05D000665 ORTHO05D000140 2.4e-06 56.2 59 39.0
Carub.0004s0452 Capsella rubella HOM05D000665 ORTHO05D000140 2.4e-06 56.2 50 52.0
Oeu021910.1 Olea europaea HOM05D000665 ORTHO05D000140 2.4e-06 56.2 66 39.4
BcaB06g28022 Brassica carinata HOM05D000665 ORTHO05D000140 3.2e-06 55.8 57 47.4
Duzib187G0414 Durio zibethinus HOM05D000665 ORTHO05D000140 3.2e-06 55.8 64 39.1
Thhalv10000052m.g Eutrema salsugineum HOM05D000665 ORTHO05D000140 3.2e-06 55.8 50 50.0
QL02p018541 Quercus lobata HOM05D000665 ORTHO05D000140 3.2e-06 55.8 64 40.6
AT2G24960 Arabidopsis thaliana HOM05D000665 ORTHO05D000140 4.2e-06 55.5 50 50.0
AT3G09790 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 4.2e-06 55.5 75 41.3
CDE12G0931 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 4.2e-06 55.5 139 28.8
Glyma.04G060100 Glycine max HOM05D000665 ORTHO05D000140 4.2e-06 55.5 61 39.3
THA.LOC104819951 Tarenaya hassleriana HOM05D000665 ORTHO05D000140 4.2e-06 55.5 66 43.9
Aqoxy2G02850 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 5.4e-06 55.1 64 43.8
BraA04t17529Z Brassica rapa HOM05D000665 ORTHO05D000140 5.4e-06 55.1 53 45.3
CSS0015007 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 5.4e-06 55.1 48 50.0
Migut.D00117 Erythranthe guttata HOM05D000665 ORTHO05D000140 5.4e-06 55.1 51 45.1
PSO578G0004 Papaver somniferum HOM05D000665 ORTHO05D000140 5.4e-06 55.1 68 44.1
PSO832G1945 Papaver somniferum HOM05D000665 ORTHO05D000140 5.4e-06 55.1 68 44.1
GSVIVG01023471001 Vitis vinifera HOM05D000218 ORTHO05D000125 5.4e-06 55.1 76 40.8
PSO210G2195 Papaver somniferum HOM05D023918 ORTHO05D000125 7.1e-06 54.7 63 38.1
Psat0s3985g0040 Pisum sativum HOM05D000665 ORTHO05D000140 7.1e-06 54.7 64 39.1
BcaC03g16109 Brassica carinata HOM05D000665 ORTHO05D000140 9.2e-06 54.3 57 40.4
C02p38790 Brassica napus HOM05D000665 ORTHO05D000140 9.2e-06 54.3 57 40.4
BolC2t09895H Brassica oleracea HOM05D000665 ORTHO05D000140 9.2e-06 54.3 57 40.4
Carub.0007s3174 Capsella rubella HOM05D000218 ORTHO05D000125 9.2e-06 54.3 69 43.5
Ciclev10024476m.g Citrus clementina HOM05D000218 ORTHO05D000125 9.2e-06 54.3 72 40.3
Glyma.06G060600 Glycine max HOM05D000665 ORTHO05D000140 9.2e-06 54.3 64 35.9
Lsat_1_v5_gn_6_77601 Lactuca sativa HOM05D000665 ORTHO05D000140 9.2e-06 54.3 62 41.9
PSO063G3901 Papaver somniferum HOM05D000665 ORTHO05D000140 9.2e-06 54.3 68 44.1
PGR044G1967 Punica granatum HOM05D000665 ORTHO05D000140 9.2e-06 54.3 69 37.7
TAR636G0533 Trochodendron aralioides HOM05D000665 ORTHO05D000140 9.2e-06 54.3 67 41.8
VMungo1309G2699 Vigna mungo HOM05D000665 ORTHO05D000140 9.2e-06 54.3 61 37.7


User provided reference genes

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