Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1512.7 849 100.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1365.5 849 89.2
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1356.3 857 86.7
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1343.2 852 87.8
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1312.0 835 85.9
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1189.1 834 76.4
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 851 77.4
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1181.8 848 74.9
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1177.5 864 76.3
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 848 74.2
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1172.5 856 76.9
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1171.0 848 74.1
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1169.8 819 77.9
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1166.8 830 75.5
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1165.6 825 76.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 832 74.9
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 849 77.0
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 847 73.9
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1159.8 790 77.8
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1158.3 847 77.2
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 827 75.6
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1156.4 848 76.5
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 827 75.5
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1154.8 834 77.2
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1149.8 825 75.2
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1149.8 849 76.2
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1149.8 814 76.3
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1149.0 848 75.9
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1145.2 825 74.9
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1144.4 825 74.8
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1144.4 843 75.0
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 846 77.7
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 842 75.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1137.1 832 75.7
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1137.1 842 75.4
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1137.1 848 76.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1132.5 762 79.0
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1128.2 842 75.3
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1127.9 813 76.6
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1127.5 831 72.7
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 846 74.8
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 791 76.0
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 886 73.8
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 829 71.5
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 758 79.3
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1112.1 848 74.3
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1111.3 759 79.1
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 847 72.1
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1106.7 851 74.3
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 828 72.5
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1099.3 832 76.1
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 952 65.8
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1098.2 855 70.4
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 855 69.9
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1094.7 842 69.5
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1094.3 855 70.3
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 821 72.2
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1084.7 847 71.3
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 835 72.5
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 829 71.0
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1079.7 829 70.9
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1079.3 823 71.1
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1079.3 818 71.8
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1078.9 855 72.0
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1076.6 819 71.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 843 69.9
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1075.1 855 69.5
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 5.8e-312 1074.7 826 70.9
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 5.8e-312 1074.3 839 71.2
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 1.2e-311 1072.8 833 70.1
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 7.0e-311 1070.5 830 67.5
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 8.7e-311 1070.1 815 70.9
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 2.6e-310 1068.5 834 70.0
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 9.8e-310 1066.6 815 70.8
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 2.2e-309 1065.4 815 70.7
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 3.1e-308 1061.6 824 69.8
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.4e-308 1060.8 847 67.3
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 2.7e-307 1058.5 824 68.8
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 1.0e-306 1056.6 834 69.9
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 1.3e-306 1056.2 828 68.6
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.3e-306 1055.4 759 72.9
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 3.8e-306 1054.7 820 69.6
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 4.3e-305 1051.2 827 69.3
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 4.0e-303 1044.6 791 70.0
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 1.7e-301 1039.3 834 68.3
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 1.4e-300 1036.2 831 69.7
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.8e-300 1035.8 830 68.7
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 2.0e-299 1032.3 891 66.3
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 4.6e-299 1031.2 854 66.3
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.3e-298 1028.9 820 67.8
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 4.3e-297 1024.6 735 72.8
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.8e-296 1021.9 674 77.2
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.9e-292 1009.2 903 63.0
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 1.6e-288 996.1 670 74.3
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 1.9e-284 982.6 831 65.8
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 2.3e-282 975.7 829 64.2
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 6.6e-282 974.2 647 76.7
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.8e-280 968.8 647 76.2
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 8.4e-277 957.2 762 70.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.4e-276 956.4 940 62.2
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 4.3e-273 944.9 625 75.4
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 5.6e-273 944.5 819 61.8
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.0e-271 938.3 819 64.8
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.1e-268 930.2 827 60.9
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.5e-265 919.1 636 74.4
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.0e-258 897.1 838 63.6
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 1.1e-252 877.1 570 77.4
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.3e-250 870.2 863 55.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.1e-243 846.3 820 55.4
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 6.0e-243 844.7 816 55.1
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 4.8e-232 808.5 790 54.1
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.0e-218 764.2 845 56.4
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.9e-218 762.3 829 55.2
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 6.7e-218 761.5 797 51.2
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 2.9e-197 693.0 429 82.8
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.2e-161 574.7 480 65.4
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.7e-152 544.3 444 67.1
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 6.2e-139 499.2 322 79.8
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 5.3e-122 443.0 307 72.0
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.0e-120 438.7 808 37.0
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.7e-120 438.0 767 36.0
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.3e-115 421.8 265 79.6
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.0e-112 412.1 385 70.1
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.2e-104 384.4 378 55.6
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 5.0e-88 330.1 875 29.7
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-74 285.4 307 56.4
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.9e-73 280.0 387 51.9
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.0e-60 238.4 219 62.1
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.4e-50 203.8 131 75.6
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.5e-49 201.1 140 72.1
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 3.8e-43 181.0 125 71.2
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.0e-40 171.4 142 67.6
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 5.4e-34 150.6 121 69.4
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-32 146.0 151 52.3
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-32 145.6 151 52.3
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.8e-30 137.5 158 52.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 2.1e-17 95.5 70 68.6
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.3e-11 76.3 77 55.8
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 6.3e-06 57.4 63 49.2


User provided reference genes

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