Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.5e-260 902.5 505 100.0
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 2.9e-208 728.8 589 73.3
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 7.6e-201 704.1 589 70.8
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 3.0e-197 692.2 589 69.6
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 7.7e-153 544.7 585 55.6
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 1.3e-152 543.9 583 56.6
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 5.5e-151 538.5 580 56.4
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 3.6e-150 535.8 578 56.9
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 8.8e-149 531.2 583 55.6
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 7.5e-148 528.1 586 54.9
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 7.5e-148 528.1 586 56.1
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 2.0e-145 520.0 577 55.3
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 2.7e-145 519.6 586 55.8
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 3.5e-145 519.2 577 55.6
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 7.7e-145 518.1 589 54.8
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 7.2e-143 511.5 584 55.0
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 2.3e-141 506.5 582 54.8
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 8.3e-139 498.0 601 53.7
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.6e-137 493.8 573 52.4
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 2.0e-137 493.4 586 53.2
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 1.0e-136 491.1 586 52.9
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 3.8e-136 489.2 584 53.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 5.0e-136 488.8 576 53.1
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 5.0e-136 488.8 608 52.0
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 1.1e-135 487.6 587 52.0
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.5e-135 487.3 562 52.8
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 9.5e-135 484.6 582 51.2
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.2e-134 484.2 588 51.0
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 6.1e-134 481.9 582 51.4
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 4.0e-133 479.2 581 51.8
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 5.2e-133 478.8 576 52.8
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 6.8e-133 478.4 586 51.5
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.3e-131 474.2 587 51.4
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 4.9e-131 472.2 577 52.0
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 6.3e-131 471.9 579 50.4
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 8.3e-131 471.5 582 50.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 1.1e-130 471.1 552 52.9
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.4e-130 470.7 577 51.5
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.8e-130 470.3 586 51.0
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 2.0e-129 466.8 581 50.8
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 3.5e-129 466.1 581 50.6
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 7.7e-129 464.9 578 51.9
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 1.3e-128 464.2 588 50.5
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 2.9e-128 463.0 573 49.6
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 8.6e-128 461.5 587 50.3
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 1.5e-127 460.7 587 50.8
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 2.5e-127 459.9 587 50.8
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 1.2e-126 457.6 580 51.0
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 1.6e-126 457.2 585 49.7
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.1e-126 456.8 584 51.9
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 6.1e-126 455.3 596 49.2
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.4e-125 454.1 575 49.7
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.8e-125 453.8 583 50.8
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 2.3e-125 453.4 582 50.5
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 6.8e-125 451.8 579 50.3
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 8.9e-125 451.4 586 50.5
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.2e-124 451.1 604 49.7
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.5e-124 450.7 584 49.8
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 3.4e-124 449.5 588 49.1
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 5.7e-124 448.7 581 50.6
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.8e-122 443.7 572 49.1
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 7.0e-122 441.8 583 49.9
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 2.0e-121 440.3 586 49.5
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 2.7e-121 439.9 579 49.7
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 3.9e-120 436.0 572 48.8
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 6.6e-120 435.3 593 49.1
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 1.1e-119 434.5 582 49.3
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 4.3e-119 432.6 581 48.7
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 1.4e-117 427.6 598 47.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 2.3e-117 426.8 588 47.6
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 2.3e-117 426.8 581 47.8
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.6e-116 423.3 585 46.7
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 5.8e-116 422.2 583 48.5
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 5.8e-116 422.2 583 48.5
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 1.7e-115 420.6 547 51.6
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.9e-114 417.2 584 47.8
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 2.4e-114 416.8 593 46.7
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 4.6e-113 412.5 589 47.0
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 3.0e-112 409.8 535 48.4
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 9.5e-111 404.8 557 48.7
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 3.6e-110 402.9 573 45.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 6.6e-104 382.1 586 45.2
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 5.6e-103 379.0 517 48.7
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.1e-101 374.8 578 46.2
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 3.4e-100 369.8 617 41.3
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.7e-99 367.5 544 46.1
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 3.8e-99 366.3 409 56.0
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 1.1e-98 364.8 579 42.5
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.8e-93 347.4 579 42.8
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.5e-92 344.4 603 41.8
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 4.9e-91 339.3 580 42.6
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 7.1e-90 335.5 437 50.1
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 9.6e-87 325.1 370 53.5
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 4.0e-85 319.7 469 47.3
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.6e-81 307.8 583 39.3
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 2.7e-81 307.0 583 40.1
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 8.7e-72 275.4 458 41.9
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.0e-67 261.9 371 47.2
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.3e-64 251.5 435 40.9
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.1e-57 227.6 427 41.2
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 8.5e-51 205.7 271 49.8
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 6.9e-45 186.0 143 69.2
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 1.1e-42 178.7 144 70.8
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 4.7e-41 173.3 142 69.0
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 5.7e-39 166.4 654 29.1
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 4.1e-37 160.2 221 48.4
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.8e-32 144.8 125 64.8
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.8e-32 144.8 544 27.0
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 6.3e-30 136.3 538 25.5
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.7e-27 128.3 553 27.5
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 6.8e-24 116.3 505 24.8
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 1.0e-19 102.4 230 38.3
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 8.6e-19 99.4 228 39.0
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 5.5e-18 96.7 468 25.9
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.0e-16 92.4 152 38.2
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.3e-14 85.5 55 80.0
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 8.3e-14 82.8 134 45.5
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.3e-14 82.8 124 42.7
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 2.4e-13 81.3 95 46.3
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 2.7e-12 77.8 94 48.9
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 4.5e-12 77.0 68 58.8
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 5.6e-10 70.1 52 65.4
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 3.4e-07 60.8 41 75.6
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 8.3e-06 56.2 70 45.7


User provided reference genes

Program Settings