Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 7.3e-264 913.3 445 100.0
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 6.7e-201 704.1 443 78.6
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.6e-199 699.5 445 76.2
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.3e-188 663.3 401 79.3
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 9.1e-174 614.0 446 67.9
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.7e-172 609.8 478 63.8
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 2.5e-171 605.9 444 65.1
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 5.7e-168 594.7 444 64.9
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 2.8e-167 592.4 444 63.5
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.3e-167 590.9 443 64.1
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 8.3e-167 590.9 443 65.9
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.8e-166 589.7 444 64.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 7.0e-166 587.8 443 64.1
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 7.0e-166 587.8 428 66.4
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 7.0e-166 587.8 444 62.8
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.5e-165 585.1 444 64.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 4.5e-165 585.1 444 63.5
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 7.7e-165 584.3 444 61.7
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.0e-164 583.9 444 62.8
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.8e-164 582.0 443 64.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.8e-164 582.0 489 58.7
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 5.0e-164 581.6 444 61.7
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.1e-163 580.5 444 61.7
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 9.4e-163 577.4 443 62.3
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 6.1e-162 574.7 444 61.7
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 8.0e-162 574.3 446 62.3
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 8.0e-162 574.3 444 61.7
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 6.8e-161 571.2 445 63.4
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 6.8e-161 571.2 444 61.3
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.2e-160 570.5 446 61.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.0e-160 569.7 446 62.6
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.0e-160 569.7 444 61.7
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.8e-160 567.4 444 63.3
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 9.8e-160 567.4 444 60.4
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 9.8e-160 567.4 444 60.8
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 9.8e-160 567.4 444 61.3
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.3e-159 567.0 444 60.4
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.2e-159 566.2 443 62.1
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 6.3e-159 564.7 444 63.1
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 8.3e-159 564.3 444 63.1
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.8e-158 563.1 444 60.4
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.1e-158 562.4 446 61.4
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 4.1e-158 562.0 445 62.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 4.1e-158 562.0 442 61.8
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.2e-157 560.5 444 60.4
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.0e-157 559.7 444 61.0
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 2.7e-157 559.3 447 60.9
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.5e-157 558.9 447 61.3
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 7.7e-157 557.8 446 59.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.0e-156 557.4 446 61.0
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.3e-156 557.0 444 61.7
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.5e-155 553.5 446 60.3
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.5e-155 552.7 446 59.9
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 5.5e-155 551.6 444 61.5
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 7.2e-155 551.2 444 60.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.6e-154 550.1 444 59.9
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.1e-154 549.7 444 59.9
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.8e-154 549.3 458 58.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 4.7e-154 548.5 441 58.5
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 6.1e-154 548.1 447 58.8
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 8.0e-154 547.7 441 58.7
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 4.0e-153 545.4 443 58.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 3.4e-152 542.3 444 57.9
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 5.7e-152 541.6 443 60.0
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 4.9e-151 538.5 444 58.1
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 4.9e-151 538.5 445 59.1
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 6.3e-151 538.1 446 58.5
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 5.4e-150 535.0 443 58.5
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 3.5e-149 532.3 447 58.8
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.0e-148 530.8 443 57.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 8.6e-148 527.7 417 60.9
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.3e-147 525.4 443 57.3
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 9.5e-147 524.2 443 56.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.2e-144 517.3 443 58.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 3.4e-144 515.8 383 65.3
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 9.8e-144 514.2 458 56.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-143 513.8 443 56.9
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.3e-143 513.8 443 56.9
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.4e-143 511.5 417 59.7
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.3e-143 511.1 443 56.2
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.4e-142 509.6 421 61.5
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.4e-142 509.6 443 56.0
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 3.2e-142 509.2 445 56.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 3.2e-142 509.2 445 56.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.5e-139 500.4 443 55.3
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 2.1e-138 496.5 365 67.1
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.7e-135 486.9 381 63.0
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.9e-135 486.1 443 56.4
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.4e-134 481.9 443 54.2
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 5.4e-134 481.9 382 60.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 9.2e-134 481.1 440 53.0
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.3e-132 477.2 445 54.6
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.3e-132 476.5 365 62.7
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.9e-131 473.4 381 60.4
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.1e-130 469.9 446 51.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.8e-128 461.8 367 63.5
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.3e-127 460.7 439 54.9
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.9e-127 458.8 443 54.6
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 6.4e-127 458.4 444 53.8
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.4e-126 457.2 443 51.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 3.0e-124 449.5 386 55.7
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.3e-123 445.7 447 50.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.1e-118 431.0 446 50.7
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.1e-118 431.0 446 50.7
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.1e-118 431.0 446 50.7
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.5e-115 420.6 463 48.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.2e-112 411.0 416 51.9
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.6e-112 409.8 418 51.2
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.6e-112 409.8 444 50.5
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 6.4e-111 405.2 458 47.4
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.9e-110 403.7 314 61.5
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 2.1e-106 390.2 448 47.1
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 2.2e-95 353.6 310 56.8
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 4.9e-95 352.4 308 55.5
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.3e-92 343.6 446 44.4
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.3e-92 343.6 435 42.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 2.1e-90 337.0 444 41.9
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.1e-89 334.7 433 44.1
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 5.3e-89 332.4 230 70.4
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.1e-86 324.7 416 41.6
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.2e-86 323.2 437 41.2
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.6e-85 320.9 444 41.9
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 6.7e-84 315.5 357 49.3
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 9.0e-81 305.1 447 41.4
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.2e-79 300.4 381 44.9
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 5.1e-76 289.3 244 57.0
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.5e-70 270.4 184 71.7
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.1e-69 265.8 252 56.7
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 3.1e-65 253.4 482 33.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 4.5e-64 249.6 516 32.9
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 5.5e-62 242.7 310 44.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.8e-52 208.8 163 62.0
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.1e-45 187.6 143 62.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.0e-35 154.5 499 30.5
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 9.2e-33 145.6 147 51.0
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 5.8e-27 126.3 102 54.9
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.9e-26 124.0 93 66.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-20 105.1 73 61.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 6.4e-18 96.3 72 59.7
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 3.6e-13 80.5 382 25.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 3.5e-08 63.9 68 47.1
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 3.5e-08 63.9 159 31.4
SMO253G0001 Selaginella moellendorffii HOM05D038926 ORTHO05D379382 4.3e-06 57.0 106 28.3


User provided reference genes

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