Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 6.6e-60 233.8 114 100.0
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 1.8e-54 215.7 110 92.7
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.6e-53 212.6 110 91.8
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 1.7e-52 209.1 110 90.0
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.3e-52 208.8 110 89.1
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 2.3e-52 208.8 110 90.0
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 8.6e-52 206.8 115 88.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 8.6e-52 206.8 110 89.1
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 1.5e-51 206.1 110 88.2
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.9e-51 205.7 110 89.1
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 1.9e-51 205.7 110 89.1
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 3.3e-51 204.9 110 87.3
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 5.6e-51 204.1 110 87.3
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 7.3e-51 203.8 110 87.3
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 7.3e-51 203.8 108 88.9
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.2e-50 203.0 107 88.8
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.2e-50 203.0 110 88.2
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.6e-50 202.6 110 87.3
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 1.6e-50 202.6 110 85.5
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 2.1e-50 202.2 110 86.4
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 2.1e-50 202.2 110 86.4
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.1e-50 202.2 110 86.4
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.1e-50 202.2 110 85.5
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 2.1e-50 202.2 110 86.4
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 2.8e-50 201.8 110 85.5
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 2.8e-50 201.8 110 84.5
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 2.8e-50 201.8 110 87.3
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 2.8e-50 201.8 110 86.4
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 3.6e-50 201.4 110 85.5
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 3.6e-50 201.4 110 85.5
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 4.7e-50 201.1 110 85.5
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 6.2e-50 200.7 110 85.5
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 6.2e-50 200.7 110 85.5
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 6.2e-50 200.7 110 85.5
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 6.2e-50 200.7 110 86.4
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 6.2e-50 200.7 110 85.5
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 8.0e-50 200.3 110 85.5
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 8.0e-50 200.3 110 86.4
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.0e-49 199.9 110 86.4
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.8e-49 199.1 110 86.4
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.8e-49 199.1 110 84.5
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 3.1e-49 198.4 110 85.5
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 3.1e-49 198.4 110 85.5
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 3.1e-49 198.4 110 85.5
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 3.1e-49 198.4 109 85.3
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 4.0e-49 198.0 110 83.6
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 5.2e-49 197.6 110 83.6
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 5.2e-49 197.6 110 84.5
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 5.2e-49 197.6 110 85.5
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 6.8e-49 197.2 110 84.5
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 6.8e-49 197.2 110 84.5
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 6.8e-49 197.2 108 84.3
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 8.9e-49 196.8 110 82.7
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.2e-48 196.4 110 83.6
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.2e-48 196.4 110 85.5
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.5e-48 196.1 110 84.5
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.5e-48 196.1 110 84.5
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 1.5e-48 196.1 110 82.7
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.5e-48 196.1 110 82.7
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 2.6e-48 195.3 110 81.8
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 2.6e-48 195.3 110 82.7
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 2.6e-48 195.3 110 82.7
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 4.4e-48 194.5 110 83.6
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 5.8e-48 194.1 110 82.7
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 5.8e-48 194.1 110 84.5
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.3e-47 193.0 110 80.9
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.2e-47 192.2 110 81.8
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 2.9e-47 191.8 108 84.3
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 4.9e-47 191.0 110 80.0
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 6.4e-47 190.7 110 80.0
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.1e-46 189.9 110 80.0
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 1.9e-46 189.1 110 80.9
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.9e-46 189.1 137 69.3
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 2.4e-46 188.7 107 81.3
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 3.2e-46 188.3 110 80.0
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.4e-46 187.6 125 75.2
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 5.4e-46 187.6 110 80.0
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 5.4e-46 187.6 110 80.0
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 9.2e-46 186.8 143 66.4
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.6e-45 186.0 125 74.4
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.6e-45 186.0 125 74.4
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 2.7e-45 185.3 110 77.3
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.5e-45 184.9 107 78.5
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 3.5e-45 184.9 107 78.5
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 3.5e-45 184.9 107 78.5
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 7.8e-45 183.7 107 80.4
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 2.3e-44 182.2 139 66.9
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 2.3e-44 182.2 107 79.4
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 1.5e-43 179.5 110 73.6
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.5e-43 178.7 100 85.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 7.3e-43 177.2 110 75.5
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 6.2e-42 174.1 98 83.7
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 4.4e-40 167.9 99 79.8
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 2.9e-39 165.2 98 79.6
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.4e-38 162.9 153 55.6
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 1.9e-38 162.5 128 62.5
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 5.4e-38 161.0 108 69.4
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 7.1e-38 160.6 96 78.1
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.2e-37 159.8 98 75.5
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 2.5e-35 152.1 112 71.4
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 5.6e-35 151.0 108 62.0
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 4.0e-33 144.8 88 72.7
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 2.0e-32 142.5 77 87.0
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 3.4e-32 141.7 108 64.8
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 9.9e-32 140.2 77 84.4
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 4.9e-31 137.9 98 66.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.2e-29 133.3 75 86.7
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 3.0e-28 128.6 77 76.6
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.9e-27 125.9 108 52.8
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 57.4
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.4e-25 119.0 62 85.5
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 4.0e-25 118.2 62 83.9
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 6.9e-25 117.5 62 83.9
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 2.0e-24 115.9 69 79.7
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 4.4e-24 114.8 62 80.6
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.8e-24 114.4 62 82.3
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 3.8e-23 111.7 80 65.0
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 5.4e-22 107.8 62 77.4
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 1.6e-21 106.3 63 76.2
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 1.6e-21 106.3 74 64.9
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.2e-18 94.4 106 48.1
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 6.2e-18 94.4 106 48.1
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 3.1e-17 92.0 155 41.9
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 2.0e-16 89.4 50 82.0
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 9.3e-14 80.5 54 74.1
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.0e-12 77.0 40 85.0
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 8.1e-10 67.4 50 72.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 8.1e-10 67.4 50 72.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 2.2e-07 59.3 35 68.6


User provided reference genes

Program Settings