Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 2401.3 1251 100.0
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1950.3 1265 81.7
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1905.2 1258 79.7
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1892.5 1267 79.1
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1460.3 1269 61.7
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1425.6 1270 60.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1381.7 1265 59.4
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1356.3 1262 58.2
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1350.5 1264 57.4
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1340.9 1265 57.5
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1330.1 1259 57.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1329.3 1275 57.7
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1324.7 1266 57.3
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1318.5 1259 56.6
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1313.9 1259 56.2
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1308.1 1269 56.7
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1305.8 1275 56.9
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1303.1 1264 55.9
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1288.5 1275 55.5
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1287.7 1261 56.0
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1281.5 1265 55.7
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1278.1 1276 55.6
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1276.9 1261 55.7
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1274.6 1260 55.6
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1273.8 1265 54.7
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1260.7 1268 56.3
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1253.0 1265 53.8
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1253.0 1270 54.7
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1244.2 1259 53.6
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1243.8 1256 54.9
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1242.6 1289 54.4
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1240.3 1277 53.2
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1238.0 1265 53.5
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1237.2 1267 54.6
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1233.8 1269 55.0
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1230.7 1266 53.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1203.3 1189 55.7
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1201.0 1268 52.4
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1200.3 1265 52.5
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1199.1 1268 53.2
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1197.2 1267 53.7
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1190.6 1252 53.0
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1182.5 1265 52.3
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1181.4 1262 52.8
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1174.5 1271 51.5
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1169.1 1255 51.5
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1166.0 1100 57.9
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1164.4 1255 51.8
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1161.0 1291 50.8
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 1257 52.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1147.9 1297 50.3
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1144.4 1259 50.0
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1142.5 1262 50.8
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1136.7 1271 50.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1136.3 1254 50.2
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1135.2 1262 50.3
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1133.6 1268 50.0
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1132.5 1268 49.8
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1130.2 1267 49.8
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1129.0 1270 50.2
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1124.4 1271 50.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 1119 56.5
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1119.8 1271 50.4
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1115.5 1248 49.8
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1114.4 1263 50.9
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1112.4 1262 49.8
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1110.1 1264 50.3
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1109.4 1264 50.3
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 1271 49.6
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1098.2 1256 48.8
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1092.8 1253 49.7
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1092.0 1183 52.7
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1085.5 935 61.2
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1075.5 1189 52.2
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 1.2e-308 1063.5 1266 47.5
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 2.7e-308 1062.4 940 60.3
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 2.3e-307 1059.3 1245 49.2
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 5.1e-307 1058.1 1316 46.9
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 1.5e-306 1056.6 1267 48.2
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.9e-306 1056.2 1267 48.1
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 1.1e-304 1050.4 1271 47.6
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.1e-304 1050.4 1266 48.3
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 2.6e-303 1045.8 1256 48.1
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.8e-299 1033.1 1269 47.2
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 6.7e-299 1031.2 1266 47.3
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 2.4e-296 1022.7 1014 56.4
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 8.5e-294 1014.2 877 61.3
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 9.4e-293 1010.7 1275 46.9
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.7e-282 974.9 1220 46.4
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.0e-275 954.1 1044 49.9
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 4.0e-275 952.2 1258 44.6
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 3.7e-249 865.9 980 50.0
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 5.2e-243 845.5 854 54.8
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.7e-222 777.3 1225 41.4
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.9e-217 760.0 1294 38.5
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 3.9e-214 749.6 1008 46.6
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 7.4e-213 745.3 952 45.9
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 6.5e-201 705.7 1123 39.5
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.3e-193 681.4 899 43.7
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 4.4e-173 613.2 1121 36.9
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.5e-170 603.2 902 40.4
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.5e-168 598.2 767 44.2
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.0e-167 592.4 570 54.9
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 5.2e-158 563.1 827 40.3
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.8e-146 522.7 437 64.1
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 4.0e-142 510.4 768 38.7
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 9.2e-131 472.6 636 42.6
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.3e-113 414.8 634 40.1
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 6.6e-113 413.3 369 60.4
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 7.6e-101 373.2 362 57.5
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 6.4e-100 370.2 351 58.4
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.1e-98 365.2 351 58.1
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.3e-97 362.5 461 48.8
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.5e-93 349.0 236 74.2
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 9.0e-78 296.6 456 35.3
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.5e-69 269.2 672 30.1
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.1e-67 263.1 468 35.0
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 7.2e-67 260.4 386 41.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.6e-64 251.9 399 40.9
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 7.4e-64 250.4 376 40.7
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-59 236.5 340 36.5
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.2e-50 206.5 301 40.5
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 5.4e-38 164.5 292 39.4
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 4.2e-35 154.8 167 48.5
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.3e-28 133.3 309 33.7
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 1.2e-21 110.2 112 48.2
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.6e-21 109.8 203 35.0
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.0e-20 107.1 112 48.2
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.6e-18 99.8 117 42.7
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 2.8e-18 99.0 112 43.8
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 2.3e-17 95.9 112 43.8
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 9.2e-14 84.0 412 26.0
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.6e-13 83.2 61 63.9


User provided reference genes

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