Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 6.1e-85 317.4 155 100.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.7e-71 272.7 142 92.3
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.7e-71 272.7 142 91.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 3.9e-71 271.6 142 90.8
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 8.9e-68 260.4 163 80.4
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-59 232.6 140 76.4
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.6e-59 232.3 139 76.3
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 4.4e-59 231.5 134 81.3
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 6.4e-58 227.6 141 75.2
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 6.4e-58 227.6 142 74.6
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 8.3e-58 227.3 135 77.8
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.1e-57 226.9 141 74.5
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.1e-57 226.9 137 76.6
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.4e-57 226.5 139 74.8
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.4e-57 226.5 141 74.5
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.1e-57 224.9 133 78.9
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 5.4e-57 224.6 137 73.7
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 5.4e-57 224.6 141 73.8
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 7.1e-57 224.2 142 72.5
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 7.1e-57 224.2 133 75.9
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 7.1e-57 224.2 133 77.4
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 7.1e-57 224.2 141 73.0
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 7.1e-57 224.2 136 77.2
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 9.2e-57 223.8 141 73.8
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.2e-56 223.4 141 73.0
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.6e-56 223.0 133 78.2
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 2.1e-56 222.6 134 78.4
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 2.1e-56 222.6 141 73.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.7e-56 222.2 142 74.6
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 2.7e-56 222.2 138 73.2
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.5e-56 221.9 135 77.8
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.5e-56 221.9 135 78.5
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.5e-56 221.9 135 77.8
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 3.5e-56 221.9 137 73.7
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.5e-56 221.9 133 77.4
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.5e-56 221.9 133 78.2
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 4.6e-56 221.5 133 74.4
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.6e-56 221.5 142 70.4
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 6.0e-56 221.1 135 77.8
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 6.0e-56 221.1 133 78.9
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 6.0e-56 221.1 135 77.0
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 6.0e-56 221.1 135 77.0
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 6.0e-56 221.1 135 77.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 6.0e-56 221.1 134 76.1
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 6.0e-56 221.1 133 75.2
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 6.0e-56 221.1 142 71.1
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 6.0e-56 221.1 133 74.4
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 7.8e-56 220.7 135 77.8
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 7.8e-56 220.7 137 73.7
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 7.8e-56 220.7 134 75.4
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 7.8e-56 220.7 137 73.7
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.0e-55 220.3 135 77.8
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.3e-55 219.9 135 76.3
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.7e-55 219.5 134 75.4
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.3e-55 219.2 135 77.0
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.3e-55 219.2 135 77.0
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.3e-55 219.2 134 76.1
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 2.3e-55 219.2 137 72.3
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 3.9e-55 218.4 142 69.7
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.9e-55 218.4 136 75.0
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.9e-55 218.4 137 72.3
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 3.9e-55 218.4 133 76.7
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.1e-55 218.0 134 73.9
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 6.6e-55 217.6 135 74.8
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 6.6e-55 217.6 133 77.4
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 6.6e-55 217.6 130 79.2
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 8.6e-55 217.2 138 72.5
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.1e-54 216.9 138 71.7
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.5e-54 216.5 138 72.5
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.9e-54 216.1 133 77.4
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.9e-54 216.1 137 72.3
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.9e-54 216.1 133 73.7
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.9e-54 216.1 134 74.6
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.9e-54 216.1 137 74.5
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 2.5e-54 215.7 137 70.8
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.3e-54 215.3 153 68.6
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 4.3e-54 214.9 137 71.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 4.3e-54 214.9 140 68.6
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.6e-54 214.5 134 73.9
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 7.3e-54 214.2 133 76.7
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 4.7e-53 211.5 133 72.2
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 4.7e-53 211.5 133 73.7
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 4.7e-53 211.5 134 71.6
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 8.1e-53 210.7 133 72.2
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.1e-52 210.3 133 71.4
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.4e-52 209.9 140 70.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 6.8e-52 207.6 137 73.0
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 2.6e-51 205.7 133 69.2
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.4e-51 205.3 142 70.4
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.7e-50 203.0 139 69.8
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.2e-50 202.6 137 70.1
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.9e-50 202.2 133 69.9
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 3.2e-49 198.7 143 63.6
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 9.2e-49 197.2 131 70.2
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.5e-48 195.3 158 60.8
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 3.0e-47 192.2 133 66.9
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 6.6e-47 191.0 135 67.4
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 2.5e-46 189.1 135 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.3e-46 188.7 131 64.9
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 3.3e-46 188.7 130 68.5
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.3e-45 186.8 129 69.8
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.3e-45 186.8 129 69.8
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 8.1e-45 184.1 131 67.9
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 8.1e-45 184.1 131 67.9
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.2e-43 180.3 133 68.4
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.5e-43 179.9 134 64.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 4.4e-43 178.3 140 62.1
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.9e-38 162.9 105 73.3
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.9e-38 162.9 198 45.5
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.6e-35 152.5 141 54.6
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 5.8e-35 151.4 140 55.7
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 2.1e-29 132.9 85 72.9
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.7e-29 132.1 135 50.4
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 8.1e-29 131.0 85 70.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.5e-27 126.7 86 68.6
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 3.4e-27 125.6 140 48.6
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.1e-24 116.3 110 53.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 4.6e-24 115.2 69 73.9
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 5.7e-22 108.2 89 60.7
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-20 104.0 151 38.4
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-20 104.0 151 38.4
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 8.4e-18 94.4 72 59.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 6.7e-15 84.7 135 35.6
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 7.4e-14 81.3 77 53.2
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.4e-12 76.3 44 77.3
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.9e-09 66.6 50 60.0
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 2.5e-09 66.2 47 70.2
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 9.4e-09 64.3 63 47.6
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 3.9e-07 58.9 59 52.5
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.5e-06 57.0 39 71.8


User provided reference genes

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