Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 0.0e+00 1275.8 629 100.0
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 5.8e-73 279.6 326 48.2
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 3.5e-54 217.2 295 43.7
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-53 214.2 423 36.2
Sed0024774 Sechium edule HOM05D002660 ORTHO05D003902 1.6e-46 191.8 85 100.0
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-46 190.3 415 33.7
PGSC0003DMG400009608 Solanum tuberosum HOM05D014842 ORTHO05D010514 4.0e-42 177.2 182 50.0
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.1e-36 159.1 290 37.2
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.6e-36 156.0 290 36.9
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.6e-36 156.0 290 36.9
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.6e-36 156.0 290 36.9
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.6e-36 156.0 290 36.9
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 9.6e-36 156.0 290 36.9
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 1.5e-33 148.7 374 32.1
Gorai.001G160300 Gossypium raimondii HOM05D014842 ORTHO05D010514 9.9e-33 146.0 169 45.0
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 1.7e-32 145.2 292 33.9
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 6.4e-32 143.3 402 28.6
Sopen05g012710 Solanum pennellii HOM05D008696 ORTHO05D010514 4.2e-31 140.6 184 41.8
Gohir.A06G098102 Gossypium hirsutum HOM05D008696 ORTHO05D010514 1.8e-29 135.2 167 42.5
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.0e-29 134.4 283 33.6
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 5.6e-28 130.2 258 35.7
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 5.6e-28 130.2 258 35.7
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 9.6e-28 129.4 235 37.4
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.4e-26 125.6 112 58.0
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 2.4e-23 114.8 215 33.0
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 4.2e-23 114.0 299 31.4
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 7.1e-23 113.2 127 47.2
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.7e-22 111.3 96 60.4
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 2.7e-22 111.3 96 60.4
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 3.5e-22 110.9 127 46.5
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.8e-21 108.6 111 54.1
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.8e-21 108.6 132 47.0
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.3e-21 108.2 117 53.0
SabraMtG0003800 Salix brachista HOM05D023423 ORTHO05D010514 3.0e-21 107.8 189 35.4
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.0e-21 107.8 132 47.0
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.0e-21 107.8 132 47.0
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 6.7e-21 106.7 127 44.9
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 6.7e-21 106.7 132 46.2
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 8.7e-21 106.3 94 55.3
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-20 105.1 127 44.1
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-20 104.8 122 43.4
arahy.Tifrunner.gnm1.ann1.K1N0C3 Arachis hypogaea HOM05D014842 ORTHO05D010514 5.6e-20 103.6 182 39.0
arahy.Tifrunner.gnm1.ann1.RHJW1F Arachis hypogaea HOM05D014842 ORTHO05D010514 5.6e-20 103.6 182 39.0
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 5.6e-20 103.6 117 48.7
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 7.4e-20 103.2 117 48.7
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 7.4e-20 103.2 117 48.7
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 9.6e-20 102.8 117 48.7
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 2.8e-19 101.3 94 52.1
arahy.Tifrunner.gnm1.ann1.M5G7Z1 Arachis hypogaea HOM05D008696 ORTHO05D010514 1.1e-18 99.4 250 32.0
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-18 99.4 94 51.1
CDE02G1301 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.1e-18 99.4 152 37.5
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 6.9e-18 96.7 107 51.4
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.2e-17 95.9 132 40.2
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-17 95.9 94 50.0
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.5e-17 95.5 118 49.2
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 4.5e-17 94.0 111 46.8
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 4.5e-17 94.0 86 46.5
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 5.8e-17 93.6 262 30.5
Psat4g178240 Pisum sativum HOM05D014842 ORTHO05D010514 1.0e-16 92.8 74 64.9
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.9e-16 91.3 109 48.6
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 2.9e-16 91.3 119 47.9
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 3.8e-16 90.9 86 55.8
SabraMtG0005500 Salix brachista HOM05D002660 ORTHO05D003902 3.8e-16 90.9 202 28.2
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 4.9e-16 90.5 94 51.1
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 4.9e-16 90.5 94 51.1
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 4.9e-16 90.5 94 51.1
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.9e-16 90.5 94 51.1
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 4.9e-16 90.5 211 31.3
arahy.Tifrunner.gnm1.ann1.MXAG91 Arachis hypogaea HOM05D008696 ORTHO05D010514 2.5e-15 88.2 207 32.4
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 3.2e-15 87.8 86 54.7
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 4.2e-15 87.4 257 30.0
arahy.Tifrunner.gnm1.ann1.9V24TL Arachis hypogaea HOM05D008696 ORTHO05D010514 5.5e-15 87.0 210 32.4
arahy.Tifrunner.gnm1.ann1.T3VZS7 Arachis hypogaea HOM05D008696 ORTHO05D010514 5.5e-15 87.0 210 32.4
arahy.Tifrunner.gnm1.ann1.D6L4V6 Arachis hypogaea HOM05D008696 ORTHO05D010514 7.1e-15 86.7 210 32.4
arahy.Tifrunner.gnm1.ann1.Z6EYTT Arachis hypogaea HOM05D008696 ORTHO05D010514 7.9e-14 83.2 214 31.8
VMungo0952G0001 Vigna mungo HOM05D014842 ORTHO05D010514 7.9e-14 83.2 96 47.9
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 1.0e-13 82.8 260 29.6
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-13 82.0 260 29.6
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 3.0e-13 81.3 266 28.6
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-13 81.3 83 47.0
Cfa021368 Carpinus fangiana HOM05D014842 ORTHO05D010514 8.7e-13 79.7 105 41.0
Ca_17158_v3 Cicer arietinum L. HOM05D014842 ORTHO05D010514 1.9e-12 78.6 189 30.2
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.9e-12 78.6 135 34.8
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-12 78.2 255 29.4
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 5.7e-12 77.0 112 37.5
SGA_v2.0_scaffold420G51310 Striga asiatica HOM05D002660 ORTHO05D003902 5.7e-12 77.0 49 87.8
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 1.6e-11 75.5 252 25.4
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.6e-11 75.5 84 46.4
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.8e-11 73.9 94 40.4
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 8.2e-11 73.2 203 29.6
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 8.2e-11 73.2 108 37.0
MBI14_g44093_MAGBIO Magnolia biondii HOM05D053244 ORTHO05D010514 8.2e-11 73.2 115 34.8
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.8e-10 72.0 108 44.4
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.8e-10 72.0 108 44.4
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 1.8e-10 72.0 91 44.0
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.4e-10 71.6 93 40.9
Psat0s1002g0040 Pisum sativum HOM05D008696 ORTHO05D010514 2.4e-10 71.6 87 44.8
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 4.1e-10 70.9 98 40.8
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.2e-09 69.3 103 44.7
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 2.6e-09 68.2 82 46.3
Potri.007G061741 Populus trichocarpa HOM05D023423 ORTHO05D010514 4.5e-09 67.4 114 33.3
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.5e-09 67.4 65 49.2
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 5.9e-09 67.0 75 52.0
CAN.G1167.15 Capsicum annuum HOM05D002660 ORTHO05D013121 3.8e-08 64.3 84 36.9
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 5.0e-08 63.9 64 43.8
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 8.5e-08 63.2 70 44.3
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 8.5e-08 63.2 118 34.7
Ca_03778_v3 Cicer arietinum L. HOM05D008696 ORTHO05D002807 1.1e-07 62.8 69 44.9
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 3.2e-07 61.2 112 38.4
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 3.2e-07 61.2 59 52.5
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.5e-07 60.5 50 54.0
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 9.4e-07 59.7 113 36.3
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.2e-06 59.3 92 38.0
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.2e-06 59.3 92 38.0
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.7e-06 58.2 111 34.2
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 2.7e-06 58.2 106 34.9
Lalb_Chr00c29g0407851 Lupinus albus HOM05D043230 ORTHO05D038884 3.6e-06 57.8 58 43.1
Dinv06708 Davidia involucrata HOM05D002660 ORTHO05D003902 4.6e-06 57.4 61 42.6
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.6e-06 57.4 86 36.0
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.6e-06 57.4 86 36.0
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.6e-06 57.4 98 38.8
SGA_v2.0_scaffold575G52999 Striga asiatica HOM05D014842 ORTHO05D010514 4.6e-06 57.4 56 50.0
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 6.1e-06 57.0 58 48.3
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 7.9e-06 56.6 56 44.6


User provided reference genes

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