Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1598.9 792 100.0
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1255.7 748 82.9
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1250.7 748 82.9
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1231.9 748 81.4
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1214.9 748 81.1
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1174.5 754 75.9
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1168.7 748 75.8
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1168.7 747 76.0
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1162.5 748 75.5
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1159.8 748 75.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1159.1 758 75.6
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1158.7 755 75.2
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1157.9 748 74.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1156.4 748 75.7
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1151.7 748 75.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1151.3 749 76.1
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 749 75.7
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1150.6 748 75.0
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1150.2 748 74.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1148.7 748 75.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1147.1 748 75.0
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1145.6 756 74.6
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1142.1 749 74.2
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1140.6 748 73.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1139.8 748 73.8
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1139.0 750 74.1
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1137.5 752 74.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1136.3 751 75.0
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1135.9 748 73.5
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1135.2 750 75.5
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1134.4 748 74.6
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1133.2 754 73.2
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1133.2 748 73.7
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1132.9 785 71.5
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 748 74.5
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 768 73.2
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 748 73.9
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 748 74.7
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1130.9 754 73.7
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1130.2 748 73.8
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1129.8 748 73.5
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1129.4 748 73.0
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1124.8 748 73.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1124.4 748 73.7
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1124.0 755 73.8
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1122.5 753 71.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1122.5 749 74.2
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1122.1 755 72.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1121.3 755 73.5
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1120.9 754 74.0
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1118.6 754 73.3
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1117.8 748 73.5
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1117.4 754 73.5
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1116.3 748 72.9
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1115.9 761 73.1
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1114.4 749 73.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1113.6 749 73.0
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1113.6 748 73.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1112.1 754 72.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1111.7 761 72.8
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1111.7 761 72.8
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1108.6 780 70.0
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1108.2 749 73.7
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 748 71.8
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1106.3 748 72.6
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1106.3 748 73.0
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1105.9 748 72.3
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1105.9 748 72.3
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1104.4 841 66.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1104.0 748 72.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1104.0 748 71.7
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1102.4 759 71.1
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1100.9 748 72.3
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1089.3 748 72.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1083.9 751 70.7
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1083.6 686 77.0
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 814 67.6
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 768 69.8
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1081.2 821 66.5
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 777 69.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 7.0e-310 1067.0 821 66.1
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 7.7e-309 1063.5 748 70.5
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 8.5e-308 1060.1 674 75.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 1.2e-306 1056.2 748 69.9
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 1.6e-306 1055.8 752 71.4
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 2.1e-306 1055.4 752 71.3
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 3.6e-306 1054.7 761 68.7
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 8.0e-306 1053.5 741 71.5
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 1.0e-305 1053.1 661 77.3
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 7.0e-302 1040.4 682 75.1
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 1.6e-301 1039.3 675 74.2
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 7.7e-301 1036.9 749 67.4
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.3e-299 1031.6 686 74.1
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 5.4e-294 1014.2 748 67.9
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 6.6e-292 1007.3 768 65.2
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 7.3e-291 1003.8 749 66.6
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 4.7e-290 1001.1 749 68.0
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 4.0e-289 998.0 704 69.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 1.5e-288 996.1 655 74.4
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 7.0e-286 987.3 756 65.3
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 3.6e-274 948.3 765 62.2
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 5.2e-273 944.5 612 75.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.9e-267 926.0 749 61.3
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.6e-266 922.9 761 60.7
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 7.6e-264 914.1 748 63.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 3.5e-261 905.2 755 60.9
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.0e-239 833.9 755 59.3
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 8.0e-205 718.0 552 65.9
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.8e-185 653.7 418 76.3
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 1.6e-184 650.6 458 68.8
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 4.1e-169 599.4 423 68.1
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 6.0e-144 515.8 329 77.8
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.9e-107 392.9 348 58.0
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.6e-102 377.5 254 75.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 6.3e-101 372.9 300 66.0
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.0e-91 341.3 194 83.0
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 5.4e-76 290.0 388 45.4
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 5.2e-63 246.9 195 62.1
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 8.9e-63 246.1 182 68.1
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 8.9e-63 246.1 275 50.2
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.4e-53 213.4 139 76.3
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.3e-41 174.5 182 51.1
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.4e-39 169.1 140 62.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.1e-33 149.4 94 72.3
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 4.3e-33 147.5 83 80.7
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 5.6e-33 147.1 177 45.8
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.8e-23 115.5 85 61.2
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 7.4e-17 93.6 68 61.8
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 9.0e-15 86.7 74 60.8
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.6e-14 85.1 84 53.6
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 1.4e-07 62.8 86 38.4


User provided reference genes

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