Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 4.0e-41 171.0 88 100.0
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 2.7e-37 158.3 88 90.9
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 6.7e-36 153.7 88 90.9
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 6.7e-36 153.7 88 90.9
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 5.5e-30 134.0 90 78.9
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 3.0e-28 128.3 90 75.6
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 3.9e-28 127.9 86 76.7
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 2.5e-27 125.2 85 75.3
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 1.3e-26 122.9 83 73.5
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 3.7e-26 121.3 83 73.5
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 1.1e-25 119.8 83 69.9
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 1.8e-25 119.0 78 76.9
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 2.4e-25 118.6 84 73.8
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 5.3e-25 117.5 85 75.3
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 1.2e-24 116.3 85 71.8
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 1.2e-24 116.3 84 73.8
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 4.5e-24 114.4 109 57.8
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 2.9e-23 111.7 120 52.5
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 8.4e-23 110.2 84 70.2
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 8.4e-23 110.2 84 70.2
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 1.4e-22 109.4 81 66.7
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 3.2e-22 108.2 90 61.1
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 9.3e-22 106.7 88 65.9
FvH4_5g07140 Fragaria vesca HOM05D007599 ORTHO05D009548 1.2e-21 106.3 76 65.8
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 1.2e-21 106.3 85 68.2
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 6.1e-21 104.0 84 67.9
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 1.0e-20 103.2 84 66.7
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 1.0e-20 103.2 81 65.4
FAN08G0181 Fragaria x ananassa HOM05D007599 ORTHO05D009548 3.0e-20 101.7 142 44.4
FAN08G0537 Fragaria x ananassa HOM05D007599 ORTHO05D009548 3.9e-20 101.3 79 59.5
FAN13G2393 Fragaria x ananassa HOM05D007599 ORTHO05D009548 5.1e-20 100.9 79 60.8
RcHm_v2.0_Chr7g0187811 Rosa chinensis HOM05D007599 ORTHO05D009548 8.7e-20 100.1 87 62.1
TPR.G21312 Trifolium pratense HOM05D007599 ORTHO05D009548 8.7e-20 100.1 88 55.7
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 1.1e-19 99.8 84 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 1.6e-18 95.9 84 63.1
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 4.1e-17 91.3 86 59.3
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 3.4e-16 88.2 62 71.0
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 4.5e-16 87.8 90 60.0
FvH4_5g10420 Fragaria vesca HOM05D007599 ORTHO05D009548 4.5e-16 87.8 81 56.8
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 1.3e-15 86.3 84 54.8
CAN.G567.112 Capsicum annuum HOM05D007599 ORTHO05D009548 2.5e-14 82.0 83 56.6
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 2.5e-14 82.0 89 55.1
Rhsim02G0254600 Rhododendron simsii HOM05D007599 ORTHO05D009548 2.5e-14 82.0 48 75.0
PRCOL_00005458 Prasinoderma coloniale HOM05D007599 ORTHO05D009548 3.2e-14 81.6 66 51.5
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 4.2e-14 81.3 52 73.1
CANSAT21G1781 Cannabis sativa HOM05D007599 ORTHO05D009548 5.5e-14 80.9 87 51.7
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 2.1e-13 79.0 89 55.1
SHI06900 Sapria himalayana HOM05D007599 ORTHO05D009548 2.1e-13 79.0 51 68.6
MCO15G174 Micromonas commoda HOM05D007599 ORTHO05D009548 3.6e-13 78.2 59 55.9
FAN04G0849 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.0e-12 76.6 81 53.1
Os01g0932550 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 1.0e-12 76.6 48 70.8
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 1.8e-12 75.9 83 54.2
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 3.9e-12 74.7 88 51.1
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 5.1e-12 74.3 88 51.1
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 5.1e-12 74.3 83 51.8
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 5.1e-12 74.3 86 52.3
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 2.5e-11 72.0 88 47.7
FAN13G0770 Fragaria x ananassa HOM05D007599 ORTHO05D009548 4.3e-11 71.2 81 49.4
AL1G56360 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 5.7e-11 70.9 36 88.9
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 7.4e-11 70.5 89 46.1
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 2.2e-10 68.9 84 51.2
Haze_09213 Corylus avellana HOM05D007599 ORTHO05D009548 2.8e-10 68.6 90 48.9
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 3.7e-10 68.2 83 49.4
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 4.8e-10 67.8 84 50.0
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 4.8e-10 67.8 84 50.0
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 8.2e-10 67.0 83 47.0
TWI60G1211 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 1.1e-09 66.6 85 44.7
Cre16.g650800 Chlamydomonas reinhardtii HOM05D007599 ORTHO05D009548 1.4e-09 66.2 80 37.5
Nitab4.5_0000357g0300 Nicotiana tabacum HOM05D007599 ORTHO05D009548 3.1e-09 65.1 83 48.2
Haze_27758 Corylus avellana HOM05D007599 ORTHO05D009548 6.9e-09 63.9 63 44.4
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 2.6e-08 62.0 67 52.2
TWI81G0432 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 3.4e-08 61.6 85 42.4
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 4.5e-08 61.2 80 43.8
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 2.9e-07 58.5 85 43.5
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 1.1e-06 56.6 83 48.2
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 1.1e-06 56.6 83 48.2
CARHR050820 Cardamine hirsuta HOM05D007599 ORTHO05D009548 2.5e-06 55.5 78 41.0
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 3.2e-06 55.1 83 44.6
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 3.2e-06 55.1 70 37.1
CBR_g48723 Chara braunii HOM05D007599 ORTHO05D009548 5.5e-06 54.3 83 45.8
BcaC08g46942 Brassica carinata HOM05D007599 ORTHO05D009548 7.2e-06 53.9 80 41.2
C06p49140 Brassica napus HOM05D007599 ORTHO05D009548 7.2e-06 53.9 80 41.2
BolC6t39948H Brassica oleracea HOM05D001180 ORTHO05D001055 7.2e-06 53.9 80 41.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 9.4e-06 53.5 77 37.7


User provided reference genes

Program Settings