Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1859.7 946 100.0
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 945 92.9
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1687.9 945 91.7
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1687.9 945 91.4
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 945 91.7
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1437.9 946 79.3
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1435.6 946 79.2
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1422.9 947 78.1
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1421.0 947 78.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1397.9 948 78.0
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1397.9 948 78.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1397.5 948 77.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1395.2 945 76.9
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1389.8 946 76.6
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1388.6 945 76.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1384.0 947 76.8
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1382.5 945 76.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1380.9 956 75.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1378.6 948 77.1
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1378.6 946 76.5
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1377.1 948 77.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1376.7 947 76.9
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1375.1 947 76.5
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1373.2 944 75.5
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1373.2 949 75.0
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1372.5 944 75.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1369.8 1003 72.5
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1368.6 955 76.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1367.8 947 75.7
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1362.4 946 75.3
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1354.7 946 74.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1354.3 941 74.8
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1352.8 989 73.4
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1350.5 993 73.1
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1349.7 948 75.8
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1349.3 993 73.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1347.4 993 73.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1347.4 948 75.4
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1347.0 945 74.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1346.6 948 75.3
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1346.6 947 75.3
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1346.3 944 74.9
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1344.3 946 74.4
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1342.4 923 75.4
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1342.0 947 74.3
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1340.1 953 74.9
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1339.7 946 74.1
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1338.9 970 73.1
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1338.6 945 74.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1338.2 948 74.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1337.8 970 73.1
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1336.6 952 73.7
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1333.5 946 74.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1332.8 968 73.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1332.4 947 74.2
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1328.9 969 73.2
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1326.6 951 74.6
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1326.6 955 73.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1325.5 945 74.5
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1325.1 946 73.4
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1323.9 947 74.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1323.5 947 73.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1323.1 948 73.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1322.4 1005 71.0
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1320.8 948 73.7
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1320.1 947 73.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1319.3 945 72.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1318.9 946 73.6
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1316.6 972 72.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1315.8 945 73.0
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1314.7 946 72.8
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1313.1 954 73.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1305.0 946 73.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1302.3 949 72.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1300.4 946 72.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1298.5 946 72.3
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1298.1 946 72.4
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1297.3 946 71.7
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1295.4 952 72.0
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1294.3 945 72.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1290.8 947 71.3
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1290.0 949 72.6
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1289.6 1004 69.3
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1288.9 950 72.7
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1287.3 952 72.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1284.2 1007 68.7
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1281.2 952 72.6
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1279.6 947 73.1
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1278.8 950 72.0
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1276.5 1010 68.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1274.2 951 72.0
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1273.5 946 72.1
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1271.5 949 72.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1271.5 953 72.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1269.6 949 72.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1268.4 976 70.1
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1264.6 982 69.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1264.2 943 71.8
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1263.4 947 70.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1262.7 947 71.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1259.6 955 69.8
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1256.5 943 70.8
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1255.4 948 69.9
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1251.9 947 71.6
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1251.1 962 69.8
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1250.3 948 69.8
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1249.6 946 70.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1249.2 962 70.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1242.6 958 69.4
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1241.1 956 69.9
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1236.1 879 75.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1235.3 943 70.0
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1231.9 944 69.7
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1231.1 948 69.2
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1227.6 953 69.4
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1222.6 946 70.4
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1219.9 949 69.0
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1218.4 948 69.4
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1216.4 949 70.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1206.4 925 70.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1205.3 948 67.5
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1203.0 950 67.3
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1135.9 806 74.3
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1134.0 888 69.4
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1123.6 954 65.7
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1105.5 946 64.5
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 1.8e-304 1049.3 816 69.6
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 7.6e-279 964.1 811 67.6
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 1.5e-263 913.3 704 70.0
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 2.9e-262 909.1 945 54.5
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.5e-262 907.9 540 84.8
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.3e-243 846.3 661 69.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.0e-239 833.2 956 50.0
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.2e-236 823.9 945 53.0
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.2e-225 786.6 581 72.8
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 4.3e-221 772.3 992 46.6
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 7.3e-221 771.5 592 71.5
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 7.8e-215 751.5 581 70.7
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 3.7e-209 732.6 587 67.5
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.2e-183 647.9 497 70.0
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 8.7e-182 641.7 426 76.8
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.8e-158 564.3 360 79.2
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.1e-155 553.1 495 62.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.1e-131 475.3 308 77.6
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.4e-131 474.9 307 77.5
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.8e-131 474.6 308 77.6
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.3e-121 441.8 902 37.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 4.8e-116 423.3 617 44.4
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 4.1e-91 340.5 708 35.6
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 7.8e-90 336.3 228 73.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.0e-82 310.1 510 42.0
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 3.3e-80 304.3 282 62.8
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 8.4e-76 289.7 197 72.6
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 2.4e-75 288.1 586 35.3
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 4.0e-70 270.8 182 74.7
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.3e-65 255.8 256 59.0
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.3e-64 251.1 173 74.6
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.7e-60 238.8 145 82.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-51 209.5 132 81.8
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 5.6e-48 197.2 118 86.4
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 5.6e-48 197.2 199 57.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.4e-46 191.8 125 76.8
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 7.6e-37 160.2 92 90.2
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.3e-25 122.1 95 67.4
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.3e-25 122.1 95 67.4
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 5.1e-25 120.9 90 71.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.8e-23 115.2 78 75.6
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.5e-20 104.0 59 83.1
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-19 102.4 112 49.1
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 3.3e-16 91.7 67 62.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 6.3e-15 87.4 59 72.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 2.0e-13 82.4 138 39.9


User provided reference genes

Program Settings