Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 9.4e-159 563.5 295 100.0
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 4.4e-148 528.1 298 89.3
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 3.7e-147 525.0 298 88.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.0e-140 502.7 311 84.6
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.6e-137 492.3 294 84.4
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.6e-137 492.3 295 83.4
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.7e-136 489.6 295 82.4
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 2.2e-136 489.2 296 83.8
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 3.8e-136 488.4 296 83.8
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.5e-136 487.6 303 81.8
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-135 486.9 291 83.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.5e-135 486.5 300 82.7
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 4.2e-135 485.0 298 83.2
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 5.5e-135 484.6 295 81.7
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 5.5e-135 484.6 301 82.4
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 7.2e-135 484.2 295 81.4
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 7.2e-135 484.2 299 81.3
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.6e-134 483.0 303 80.9
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 3.6e-134 481.9 295 81.4
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.6e-134 481.9 295 80.7
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 4.7e-134 481.5 297 81.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 4.7e-134 481.5 298 82.2
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 6.1e-134 481.1 307 79.8
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 8.0e-134 480.7 297 81.8
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.0e-133 480.3 295 82.0
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.8e-133 479.6 295 81.0
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.8e-133 479.6 295 80.7
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.3e-133 479.2 295 81.0
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.0e-133 478.8 295 81.4
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 4.0e-133 478.4 296 81.8
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 4.0e-133 478.4 295 80.7
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 5.2e-133 478.0 293 82.3
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 5.2e-133 478.0 289 83.4
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 5.2e-133 478.0 298 81.5
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 6.7e-133 477.6 295 80.3
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.2e-132 476.9 300 80.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.5e-132 476.5 295 81.4
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.5e-132 476.5 295 82.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.5e-132 476.5 297 82.8
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.6e-132 475.7 287 81.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.3e-132 475.3 289 81.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.3e-132 475.3 280 84.3
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 4.4e-132 474.9 295 80.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.7e-132 474.6 295 80.3
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 7.5e-132 474.2 295 80.0
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 7.5e-132 474.2 278 83.5
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 7.5e-132 474.2 278 83.5
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 7.5e-132 474.2 278 83.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 9.7e-132 473.8 296 80.1
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.7e-132 473.8 298 79.9
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 9.7e-132 473.8 297 80.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.7e-131 473.0 296 79.4
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.2e-131 472.6 280 84.3
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 3.7e-131 471.9 300 79.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 4.8e-131 471.5 306 78.8
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 4.8e-131 471.5 302 80.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 6.3e-131 471.1 299 84.6
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.3e-131 471.1 277 84.1
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.2e-131 470.7 295 79.3
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-130 470.3 289 81.0
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-130 470.3 280 83.6
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-130 469.5 286 80.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.8e-130 469.5 303 78.9
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 4.1e-130 468.4 298 79.9
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 7.0e-130 467.6 280 83.2
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 7.0e-130 467.6 295 81.0
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 7.0e-130 467.6 280 82.9
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 7.0e-130 467.6 281 81.9
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 9.1e-130 467.2 280 81.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.6e-129 466.5 295 79.7
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 2.7e-129 465.7 270 85.2
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 5.9e-129 464.5 302 78.5
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 7.7e-129 464.2 302 77.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 7.7e-129 464.2 288 80.9
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.3e-128 463.4 297 78.1
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.3e-128 463.4 299 77.9
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.7e-128 463.0 274 82.8
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.7e-128 463.0 300 78.7
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.2e-128 462.6 280 82.5
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.9e-128 462.2 299 77.9
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.8e-128 461.8 280 82.1
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 5.0e-128 461.5 280 82.1
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 8.5e-128 460.7 280 82.1
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.5e-127 459.9 300 78.3
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 3.2e-127 458.8 262 86.3
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.2e-127 458.8 280 81.4
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.2e-127 458.8 307 77.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.2e-127 458.8 295 78.6
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 1.2e-126 456.8 296 79.4
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.6e-126 456.4 291 80.4
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.6e-126 455.3 297 78.5
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 8.0e-126 454.1 297 77.1
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 8.0e-126 454.1 292 78.1
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.4e-125 453.4 280 81.8
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.0e-125 452.2 297 76.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.8e-125 451.1 299 76.9
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 8.8e-125 450.7 293 78.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.2e-124 450.3 289 78.5
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 4.4e-124 448.4 289 78.2
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 9.8e-124 447.2 293 77.1
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.3e-123 444.1 295 75.6
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.1e-122 442.2 278 79.5
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.1e-122 441.8 293 77.1
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 4.1e-122 441.8 286 78.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.0e-121 439.5 280 78.9
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 3.5e-121 438.7 283 78.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.7e-120 436.4 282 77.7
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 2.9e-120 435.6 296 76.4
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.9e-120 435.6 300 75.0
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.8e-120 435.3 280 80.4
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.1e-119 433.7 280 78.6
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-119 433.7 384 63.0
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 2.5e-119 432.6 296 74.0
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 4.2e-119 431.8 279 77.8
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.6e-118 429.9 300 74.3
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.0e-118 427.6 268 81.3
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.0e-117 425.6 326 70.9
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 4.0e-117 425.2 299 75.3
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.8e-117 424.5 291 74.9
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.1e-114 417.2 266 79.3
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 7.8e-113 411.0 287 73.2
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 5.0e-112 408.3 255 82.0
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.1e-111 407.1 251 81.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 5.6e-111 404.8 221 90.0
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 7.3e-111 404.4 221 90.5
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.2e-105 387.1 218 86.7
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.2e-105 387.1 218 86.7
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.6e-105 386.7 262 75.6
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 4.6e-105 385.2 280 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.7e-104 383.3 250 74.4
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.5e-103 380.2 252 71.4
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 2.5e-103 379.4 251 73.7
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.1e-102 376.3 250 71.6
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.1e-97 359.8 255 68.2
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 6.0e-97 358.2 200 87.0
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.1e-96 355.1 303 65.7
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 6.2e-94 348.2 212 81.6
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 9.9e-92 340.9 215 80.9
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.7e-89 332.8 182 91.2
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.3e-88 330.5 182 88.5
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 8.9e-85 317.8 208 79.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.7e-80 303.5 174 86.8
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 8.1e-78 294.7 221 72.9
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 6.0e-73 278.5 189 74.6
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 3.6e-70 269.2 152 88.2
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 1.4e-66 257.3 194 68.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.9e-60 234.6 146 78.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-58 230.7 209 61.7
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-45 188.0 116 75.9
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.4e-44 183.0 209 49.8
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.8e-43 179.5 158 61.4
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 5.0e-43 179.1 177 58.2
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 3.2e-42 176.4 136 69.1
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 3.3e-39 166.4 102 77.5
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.0e-35 154.8 86 83.7
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.6e-33 147.5 93 75.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.1e-29 133.3 86 76.7
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.2e-27 127.1 305 32.1
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 7.2e-26 122.1 209 41.1
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 9.4e-26 121.7 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 9.4e-26 121.7 66 89.4
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 3.9e-24 116.3 94 64.9
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 1.3e-22 111.3 171 40.9
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 3.4e-15 86.7 158 39.2
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-14 84.7 79 59.5
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 2.2e-14 84.0 53 73.6
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 4.8e-14 82.8 85 52.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.0e-13 79.0 87 52.9
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.0e-13 79.0 87 52.9
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 5.9e-12 75.9 103 43.7
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 7.7e-12 75.5 92 46.7
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 3.2e-10 70.1 43 79.1
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.7e-09 67.0 110 40.9
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.7e-09 66.2 77 49.4
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 2.3e-08 63.9 57 57.9
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 4.0e-08 63.2 53 62.3
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 8.8e-08 62.0 76 51.3
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 2.6e-07 60.5 42 73.8
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.7e-07 59.3 34 79.4


User provided reference genes

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