Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.4e-200 701.4 349 100.0
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 4.6e-181 637.9 349 90.0
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 2.5e-163 578.9 349 81.9
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 9.0e-161 570.5 350 80.3
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 2.9e-159 565.5 341 79.8
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 3.2e-158 562.0 344 79.9
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 4.2e-158 561.6 349 78.8
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.2e-157 560.1 351 78.9
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 1.6e-157 559.7 349 81.4
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 2.7e-157 558.9 346 78.6
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 3.6e-157 558.5 352 77.6
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 1.4e-156 556.6 349 78.2
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.9e-156 555.1 352 77.0
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.1e-155 553.5 345 78.8
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.5e-155 553.1 354 77.7
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 5.7e-155 551.2 347 76.1
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.7e-154 549.7 350 77.1
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 3.7e-154 548.5 303 88.8
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.1e-153 547.0 298 90.3
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.4e-153 546.6 343 78.4
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 2.4e-153 545.8 354 76.8
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 3.1e-153 545.4 343 78.4
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 3.1e-153 545.4 351 76.4
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 4.1e-153 545.0 350 78.0
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 5.3e-153 544.7 350 76.3
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.2e-152 543.5 350 77.4
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 2.6e-152 542.3 384 71.9
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 5.9e-152 541.2 343 77.3
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.3e-151 540.0 350 75.7
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.2e-151 539.3 374 72.5
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.5e-150 535.8 351 74.6
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 1.6e-149 533.1 303 85.1
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 3.6e-149 531.9 348 74.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 6.1e-149 531.2 360 74.4
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 7.9e-149 530.8 350 74.9
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.0e-148 530.4 358 74.0
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.4e-148 530.0 396 69.4
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.8e-148 529.6 360 74.4
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 8.8e-148 527.3 358 72.3
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 1.5e-147 526.6 346 75.4
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.5e-147 526.6 348 73.9
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.5e-147 526.6 350 74.9
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 2.0e-147 526.2 344 74.7
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.6e-147 525.8 302 83.4
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 4.4e-147 525.0 318 80.2
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 7.4e-147 524.2 338 75.7
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.3e-146 523.5 354 72.3
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.8e-146 522.3 302 82.8
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 3.7e-146 521.9 348 75.0
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 4.8e-146 521.5 345 74.5
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 4.8e-146 521.5 350 72.3
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 1.4e-145 520.0 352 72.4
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.8e-145 519.6 352 72.7
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 3.1e-145 518.8 302 82.8
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 3.1e-145 518.8 350 73.1
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 4.1e-145 518.5 344 74.7
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 9.1e-145 517.3 359 71.6
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.6e-144 516.5 350 72.6
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 1.6e-144 516.5 344 73.0
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 2.6e-144 515.8 344 73.8
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 3.5e-144 515.4 346 73.1
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 5.9e-144 514.6 305 81.6
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 2.2e-143 512.7 350 72.3
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.2e-143 512.7 344 73.3
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 8.5e-143 510.8 346 72.5
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 8.5e-143 510.8 346 72.5
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 1.5e-142 510.0 303 81.5
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.9e-142 509.6 314 79.3
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 4.2e-142 508.4 348 71.8
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.2e-141 506.9 314 77.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 6.7e-140 501.1 303 81.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.6e-139 499.2 310 77.1
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.2e-138 496.1 310 78.4
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.1e-137 491.9 342 70.2
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 2.7e-136 489.2 383 66.8
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 2.7e-136 489.2 310 75.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.7e-136 487.6 325 74.8
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.9e-134 483.0 320 73.8
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.2e-133 480.3 338 71.0
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 4.7e-133 478.4 325 71.4
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 6.1e-133 478.0 327 74.6
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 6.3e-130 468.0 313 72.2
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.1e-126 457.2 281 78.6
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 3.6e-125 452.2 360 66.9
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 5.2e-124 448.4 345 64.6
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.8e-119 432.2 303 66.3
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.8e-119 432.2 303 66.3
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.5e-118 430.3 304 67.4
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.3e-118 428.7 308 68.5
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 4.4e-115 418.7 302 65.6
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 3.7e-114 415.6 283 72.4
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 8.3e-114 414.5 357 61.1
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 3.3e-102 375.9 267 71.2
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 2.1e-101 373.2 281 64.8
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 1.1e-97 360.9 252 72.6
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.1e-97 359.0 245 77.6
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.3e-95 354.0 327 53.2
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.3e-86 322.4 242 70.2
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 5.6e-86 322.0 306 51.0
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.7e-82 310.5 258 60.5
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.4e-81 307.4 184 79.9
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 4.2e-81 305.8 310 50.3
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 9.3e-81 304.7 226 68.1
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.0e-79 301.2 309 54.0
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 7.3e-78 295.0 241 61.0
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 7.4e-70 268.5 202 69.8
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.1e-60 236.5 124 88.7
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.1e-60 236.5 124 88.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 1.0e-50 204.9 180 65.0
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 1.7e-50 204.1 134 67.2
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 5.0e-50 202.6 134 66.4
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 9.3e-49 198.4 137 76.6
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.1e-38 164.9 103 69.9
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.8e-36 157.5 297 35.7
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.3e-34 151.4 306 30.7
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.2e-32 144.8 144 57.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 5.2e-31 139.4 125 58.4
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 3.3e-30 136.7 80 80.0
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 7.4e-30 135.6 180 45.0
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.1e-28 131.7 102 62.7
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 2.2e-26 124.0 117 56.4
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.2e-25 120.2 181 45.3
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 4.4e-22 109.8 102 55.9
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 4.4e-22 109.8 114 52.6
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 5.7e-22 109.4 122 49.2
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 6.3e-21 105.9 71 60.6
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.1e-20 105.1 180 40.6
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.8e-13 80.5 64 65.6
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.8e-12 77.8 46 78.3
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.7e-10 71.2 59 64.4


User provided reference genes

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