Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 1.4e-88 329.7 182 100.0
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 9.5e-61 237.3 181 70.2
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 6.8e-59 231.1 176 69.3
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 2.5e-53 212.6 181 64.1
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 6.0e-23 111.7 174 40.8
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 3.3e-21 105.9 171 39.8
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 9.6e-21 104.4 177 38.4
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.1e-20 103.2 188 38.3
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 2.1e-20 103.2 173 38.7
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.1e-19 100.9 179 37.4
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.0e-19 99.0 179 38.0
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 6.9e-19 98.2 179 38.0
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.0e-18 96.7 175 38.9
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 5.8e-18 95.1 171 38.6
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.7e-17 93.6 169 38.5
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.9e-17 92.8 179 36.9
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 3.8e-17 92.4 189 38.1
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 6.4e-17 91.7 175 35.4
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 8.4e-17 91.3 193 34.7
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.9e-16 90.1 189 34.4
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 9.3e-16 87.8 176 34.7
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 1.6e-15 87.0 190 33.2
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.1e-15 86.7 184 36.4
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.8e-14 83.6 183 33.9
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 2.3e-14 83.2 196 33.7
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 3.9e-14 82.4 127 40.9
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 1.9e-13 80.1 175 32.0
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 5.6e-13 78.6 138 39.1
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 9.6e-13 77.8 175 32.0
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 9.6e-13 77.8 183 33.9
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.1e-12 76.6 182 34.6
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 2.1e-12 76.6 122 42.6
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.8e-12 76.3 175 33.1
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 3.6e-12 75.9 198 31.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 4.8e-12 75.5 185 34.1
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 8.1e-12 74.7 183 34.4
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 1.1e-11 74.3 175 34.9
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.1e-11 74.3 175 34.9
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 1.8e-11 73.6 185 33.0
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 4.0e-11 72.4 176 31.2
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 4.0e-11 72.4 227 28.6
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 4.0e-11 72.4 184 32.1
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 5.3e-11 72.0 177 33.3
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 7.6e-10 68.2 132 40.9
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 2.9e-09 66.2 127 34.6
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.8e-09 65.9 170 32.4
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 4.9e-09 65.5 178 36.5
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 4.9e-09 65.5 169 35.5
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 2.4e-08 63.2 171 31.6
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.2e-08 62.8 172 33.1
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 5.5e-08 62.0 182 30.2
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 7.1e-08 61.6 170 31.8
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 7.1e-08 61.6 152 34.9
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.2e-07 60.8 179 35.8
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 2.7e-07 59.7 176 32.4
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 3.5e-07 59.3 179 35.8
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 4.6e-07 58.9 178 31.5
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 1.0e-06 57.8 186 29.6
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.3e-06 57.4 178 28.1
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 6.7e-06 55.1 155 29.0
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 6.7e-06 55.1 168 30.4


User provided reference genes

Program Settings