Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.3e-53 211.5 107 100.0
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.2e-49 198.7 105 92.4
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.4e-48 196.1 106 92.5
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.3e-46 189.5 106 87.7
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.0e-46 188.3 106 87.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.1e-45 186.4 106 88.7
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.9e-45 185.7 106 86.8
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.9e-45 185.7 106 87.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 2.5e-45 185.3 106 86.8
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.5e-45 185.3 106 84.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.5e-45 185.3 106 86.8
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 86.8
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 86.8
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 86.8
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 86.8
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 3.3e-45 184.9 104 88.5
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 83.0
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 86.8
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 5.6e-45 184.1 98 92.9
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 5.6e-45 184.1 106 82.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 7.3e-45 183.7 104 85.6
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 7.3e-45 183.7 106 84.9
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 9.5e-45 183.3 104 85.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.2e-44 183.0 106 83.0
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.6e-44 182.6 103 84.5
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.6e-44 182.6 104 85.6
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.6e-44 182.6 107 85.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.0
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 85.8
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.0
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.9
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.6e-44 181.4 107 85.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.6e-44 181.4 106 83.0
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 3.6e-44 181.4 103 87.4
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.7e-44 181.0 103 87.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 4.7e-44 181.0 104 87.5
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 4.7e-44 181.0 106 84.0
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 4.7e-44 181.0 100 88.0
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 4.7e-44 181.0 106 84.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 6.2e-44 180.6 100 88.0
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 6.2e-44 180.6 106 83.0
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 6.2e-44 180.6 106 83.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 6.2e-44 180.6 106 84.9
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 8.1e-44 180.3 106 84.0
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 8.1e-44 180.3 100 88.0
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.1e-43 179.9 106 84.0
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.1e-43 179.9 106 84.0
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.1e-43 179.9 106 84.9
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 1.4e-43 179.5 106 83.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.4e-43 179.5 107 84.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 83.7
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 84.0
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 83.0
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 83.0
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 83.0
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 3.1e-43 178.3 106 83.0
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 4.0e-43 177.9 103 84.5
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 4.0e-43 177.9 107 84.1
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 5.2e-43 177.6 106 82.1
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 5.2e-43 177.6 106 82.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 5.2e-43 177.6 106 82.1
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 5.2e-43 177.6 106 83.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 6.8e-43 177.2 104 84.6
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 6.8e-43 177.2 106 82.1
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.8e-43 177.2 100 85.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 6.8e-43 177.2 106 83.0
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 6.8e-43 177.2 104 85.6
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 8.9e-43 176.8 106 82.1
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 8.9e-43 176.8 106 81.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 8.9e-43 176.8 103 83.5
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 8.9e-43 176.8 98 86.7
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.2e-42 176.4 106 80.2
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 105 82.9
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.5e-42 176.0 100 84.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.5e-42 176.0 100 87.0
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.5e-42 176.0 100 86.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-42 176.0 106 81.1
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-42 176.0 106 81.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 1.5e-42 176.0 104 84.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 3.4e-42 174.9 98 86.7
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 4.4e-42 174.5 109 79.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 4.4e-42 174.5 106 82.1
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 5.8e-42 174.1 107 81.3
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.7e-41 172.6 101 85.1
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.2e-41 172.2 104 80.8
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 2.9e-41 171.8 101 84.2
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.8e-41 171.4 106 81.1
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 3.8e-41 171.4 106 78.3
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 4.9e-41 171.0 104 81.7
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 4.9e-41 171.0 104 82.7
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 80.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 8.4e-41 170.2 104 81.7
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 82.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.4e-40 169.5 100 82.0
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.9e-40 169.1 104 79.8
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 9.2e-40 166.8 98 83.7
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.1e-39 165.6 106 78.3
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 7.8e-39 163.7 106 74.5
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 7.8e-39 163.7 106 74.5
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.3e-38 162.9 106 77.4
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.7e-38 162.5 101 80.2
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 6.6e-38 160.6 106 77.4
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.1e-37 159.8 106 74.5
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 3.3e-37 158.3 101 80.2
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.6e-37 157.5 106 75.5
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.6e-36 156.0 98 79.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.8e-36 155.2 95 83.2
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-35 153.3 106 70.8
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.8e-35 152.5 100 76.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.4e-35 152.1 106 69.8
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 5.2e-35 151.0 98 73.5
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.5e-34 149.4 106 70.8
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.5e-34 149.4 107 70.1
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 70.1
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 70.1
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 2.6e-34 148.7 106 67.9
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 4.4e-34 147.9 107 69.2
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 4.4e-34 147.9 107 69.2
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 4.4e-34 147.9 106 69.8
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 7.6e-34 147.1 102 69.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 3.8e-33 144.8 107 67.3
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 69.4
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 69.4
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 69.4
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 69.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.1e-32 143.3 106 67.0
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 1.9e-32 142.5 107 67.3
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.9e-32 142.5 85 84.7
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.4e-32 142.1 107 66.4
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 9.3e-32 140.2 107 66.4
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 9.3e-32 140.2 99 68.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.8e-31 137.1 105 64.8
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.3e-30 135.6 106 68.9
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 5.6e-29 131.0 106 67.0
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 8.1e-28 127.1 91 73.6
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 3.1e-27 125.2 81 75.3
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.1e-27 125.2 66 90.9
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 7.6e-26 120.6 96 66.7
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.3e-25 119.8 75 84.0
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.3e-25 119.8 98 59.2
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.7e-25 119.4 96 66.7
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 4.2e-24 114.8 94 64.9
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.5e-23 111.7 65 83.1
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.0e-22 110.2 97 59.8
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.3e-22 109.0 90 63.3
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 3.9e-22 108.2 91 62.6
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 8.7e-22 107.1 56 89.3
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 5.6e-21 104.4 88 60.2
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 2.6e-18 95.5 56 80.4
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.9e-18 93.6 79 64.6
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.2e-17 92.4 87 57.5
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 2.9e-17 92.0 56 78.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.1e-15 85.9 56 71.4
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.3e-14 83.2 57 75.4
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.8e-14 82.8 106 48.1
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.4e-11 73.2 87 48.3
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 5.5e-08 61.2 43 69.8
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 2.1e-07 59.3 89 38.2


User provided reference genes

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