Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 9.4e-65 250.0 121 100.0
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 8.2e-61 236.9 120 95.8
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 8.2e-61 236.9 120 95.8
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 2.4e-60 235.3 119 95.8
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 2.1e-56 222.2 138 81.2
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 4.7e-56 221.1 154 74.7
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 6.1e-56 220.7 119 91.6
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 4.0e-55 218.0 109 96.3
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 4.0e-55 218.0 109 96.3
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 6.7e-55 217.2 164 70.7
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 7.5e-54 213.8 137 78.8
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 1.8e-52 209.1 146 74.7
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-51 205.7 163 66.3
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.2e-46 189.9 127 78.0
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.2e-46 189.9 127 78.0
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.2e-46 189.9 127 78.0
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 3.4e-46 188.3 170 62.4
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.7e-42 176.0 160 61.9
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.7e-42 176.0 160 61.9
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.7e-42 176.0 160 61.9
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.7e-42 176.0 160 61.9
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.7e-42 176.0 160 61.9
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 1.7e-42 176.0 160 61.9
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.5e-41 172.9 147 66.0
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 1.5e-38 162.9 127 70.9
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 2.0e-38 162.5 121 70.2
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.9e-37 157.9 143 61.5
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 4.1e-36 154.8 116 69.8
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.3e-34 149.8 143 58.7
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.8e-31 139.4 111 69.4
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 6.8e-31 137.5 134 59.0
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 5.7e-30 134.4 65 96.9
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 9.8e-30 133.7 68 92.6
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 4.9e-29 131.3 68 91.2
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 1.4e-28 129.8 64 95.3
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 3.2e-28 128.6 64 93.8
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 3.2e-28 128.6 64 93.8
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 3.2e-28 128.6 64 93.8
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 3.2e-28 128.6 64 93.8
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 3.2e-28 128.6 64 93.8
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 3.2e-28 128.6 64 93.8
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 4.1e-28 128.3 68 88.2
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 5.4e-28 127.9 68 89.7
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 5.4e-28 127.9 68 89.7
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.4e-28 127.9 68 89.7
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 5.4e-28 127.9 68 89.7
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 7.0e-28 127.5 61 96.7
LjContig00489g0013211 Lotus japonicus HOM05D001966 ORTHO05D007227 1.6e-27 126.3 110 63.6
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-27 125.9 68 88.2
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.7e-27 125.6 68 85.3
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 4.6e-27 124.8 70 87.1
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 5.9e-27 124.4 70 85.7
arahy.Tifrunner.gnm1.ann1.UQV5ZS Arachis hypogaea HOM05D001966 ORTHO05D007227 1.7e-26 122.9 59 98.3
arahy.Tifrunner.gnm1.ann1.Z8IK0I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.7e-26 122.9 59 98.3
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 1.7e-26 122.9 64 90.6
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 1.5e-25 119.8 61 90.2
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 2.5e-25 119.0 62 90.3
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 5.6e-25 117.9 62 91.9
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 9.5e-25 117.1 68 83.8
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 9.5e-25 117.1 68 83.8
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 1.2e-24 116.7 55 98.2
Phvul.002G203700 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 1.6e-24 116.3 56 96.4
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 3.6e-24 115.2 65 84.6
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 4.7e-24 114.8 66 89.4
Sopen06g012240 Solanum pennellii HOM05D000014 ORTHO05D000016 4.7e-24 114.8 54 100.0
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.0e-23 113.6 105 59.0
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 1.0e-23 113.6 58 91.4
arahy.Tifrunner.gnm1.ann1.HASF1T Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-23 113.2 59 91.5
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 2.3e-23 112.5 70 80.0
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 6.8e-23 110.9 62 82.3
BcaNung01515 Brassica carinata HOM05D001966 ORTHO05D010449 8.9e-23 110.5 56 94.6
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.2e-22 110.2 66 86.4
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 5.8e-22 107.8 57 86.0
BcaC04g22012 Brassica carinata HOM05D001966 ORTHO05D007227 2.9e-21 105.5 57 93.0
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 3.7e-21 105.1 57 86.0
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-20 103.2 50 94.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-20 103.2 50 94.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 1.4e-20 103.2 50 94.0
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 1.9e-20 102.8 104 56.7
Migut.B00950 Erythranthe guttata HOM05D001966 ORTHO05D007227 9.2e-20 100.5 49 98.0
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 2.0e-19 99.4 50 92.0
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 2.0e-19 99.4 62 79.0
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 3.5e-19 98.6 104 53.8
MD15G1346300 Malus domestica HOM05D001966 ORTHO05D007227 6.0e-19 97.8 57 87.7
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 1.0e-18 97.1 61 80.3
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 3.9e-18 95.1 52 84.6
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 3.3e-17 92.0 51 82.4
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 4.3e-17 91.7 53 83.0
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.5e-17 90.5 109 46.8
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.2e-16 90.1 47 89.4
BraSC58t46466Z Brassica rapa HOM05D001966 ORTHO05D007227 2.1e-16 89.4 45 95.6
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 6.2e-16 87.8 76 61.8
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.4e-15 86.7 66 72.7
Phvul.003G142600 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 2.0e-14 82.8 45 86.7
Gorai.008G099100 Gossypium raimondii HOM05D001070 ORTHO05D010233 2.6e-14 82.4 76 63.2
Peaxi162Scf00383g00065 Petunia axillaris HOM05D001966 ORTHO05D007227 3.4e-14 82.0 42 92.9
arahy.Tifrunner.gnm1.ann1.DHX5K3 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.8e-14 81.3 50 80.0
Gohir.D12G091540 Gossypium hirsutum HOM05D001070 ORTHO05D010233 5.8e-14 81.3 76 61.8
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 2.9e-13 79.0 47 78.7
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 2.9e-13 79.0 72 61.1
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 3.2e-12 75.5 58 67.2
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 3.2e-12 75.5 49 71.4
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 6.0e-11 71.2 38 86.8
arahy.Tifrunner.gnm1.ann1.MZV923 Arachis hypogaea HOM05D001966 ORTHO05D007227 8.6e-10 67.4 33 93.9
Cpa.g.sc61.38 Carica papaya HOM05D001966 ORTHO05D007227 9.5e-09 63.9 34 88.2
EL10Ac8g19704 Beta vulgaris HOM05D001966 ORTHO05D007227 1.2e-08 63.5 28 96.4
MELO3C027875.2 Cucumis melo HOM05D001966 ORTHO05D007227 4.7e-08 61.6 33 84.8
Ca_03784_v3 Cicer arietinum L. HOM05D001966 ORTHO05D010449 3.1e-07 58.9 41 70.7
MELO3C000925.2 Cucumis melo HOM05D001966 ORTHO05D007227 6.8e-07 57.8 33 81.8
Nitab4.5_0003065g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.5e-06 56.6 24 95.8
arahy.Tifrunner.gnm1.ann1.XERY24 Arachis hypogaea HOM05D001966 ORTHO05D007227 7.6e-06 54.3 26 88.5
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 9.9e-06 53.9 45 66.7


User provided reference genes

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