Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 2.1e-39 165.2 83 100.0
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 2.0e-34 148.7 83 89.2
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 1.3e-33 146.0 83 88.0
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 2.9e-33 144.8 79 89.9
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 4.7e-31 137.5 84 84.5
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 1.7e-20 102.4 76 71.1
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 6.3e-20 100.5 77 71.4
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 2.4e-19 98.6 77 70.1
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 5.3e-19 97.4 76 68.4
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 5.3e-19 97.4 77 70.1
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 2.7e-18 95.1 80 66.2
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 3.5e-18 94.7 80 68.8
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 4.5e-18 94.4 77 70.1
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 2.9e-17 91.7 81 63.0
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.9e-16 89.0 78 66.7
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 7.2e-16 87.0 80 62.5
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.2e-15 86.3 79 64.6
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 2.1e-15 85.5 78 65.4
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 1.4e-14 82.8 79 58.2
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 1.4e-14 82.8 79 58.2
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 6.8e-14 80.5 72 63.9
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 8.8e-14 80.1 85 54.1
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.2e-13 79.7 72 63.9
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.2e-13 79.7 72 63.9
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 2.0e-13 79.0 83 59.0
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.6e-13 78.6 78 61.5
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 3.4e-13 78.2 85 56.5
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 3.4e-13 78.2 76 57.9
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 4.4e-13 77.8 78 59.0
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 3.7e-12 74.7 81 53.1
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 3.7e-12 74.7 80 55.0
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 6.3e-12 73.9 80 53.8
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 6.3e-12 73.9 81 53.1
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 6.3e-12 73.9 71 52.1
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 8.3e-12 73.6 85 54.1
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 1.4e-11 72.8 72 55.6
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 3.1e-11 71.6 63 65.1
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 5.4e-11 70.9 73 54.8
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 5.4e-11 70.9 71 54.9
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 7.0e-11 70.5 81 49.4
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 9.1e-11 70.1 87 52.9
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 9.1e-11 70.1 76 50.0
Nn2g11761 Nelumbo nucifera HOM05D008067 ORTHO05D010226 1.6e-10 69.3 68 47.1
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 1.6e-10 69.3 82 51.2
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 2.7e-10 68.6 71 53.5
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 2.7e-10 68.6 62 54.8
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 3.5e-10 68.2 65 56.9
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 4.5e-10 67.8 61 57.4
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 4.5e-10 67.8 80 50.0
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 4.5e-10 67.8 75 50.7
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 4.5e-10 67.8 68 52.9
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 7.7e-10 67.0 84 57.1
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 7.7e-10 67.0 72 54.2
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 7.7e-10 67.0 39 76.9
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 1.3e-09 66.2 78 52.6
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 1.7e-09 65.9 84 50.0
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 2.2e-09 65.5 75 50.7
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 2.9e-09 65.1 96 44.8
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 2.5e-08 62.0 53 60.4
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 2.5e-08 62.0 68 51.5
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 3.2e-08 61.6 54 59.3
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 4.2e-08 61.2 58 56.9
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 4.2e-08 61.2 75 52.0
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 9.4e-08 60.1 54 63.0
Peaxi162Scf00546g00115 Petunia axillaris HOM05D008067 ORTHO05D010226 9.4e-08 60.1 58 55.2
Sed0018286 Sechium edule HOM05D008067 ORTHO05D010226 9.4e-08 60.1 77 45.5
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 1.2e-07 59.7 68 51.5
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 1.6e-07 59.3 69 49.3
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 2.7e-07 58.5 50 60.0
Sed0018150 Sechium edule HOM05D008067 ORTHO05D010226 6.1e-07 57.4 79 44.3
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 1.8e-06 55.8 41 65.9


User provided reference genes

Program Settings