Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.5e-134 480.7 242 100.0
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.4e-98 362.1 242 75.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.4e-96 356.7 242 74.8
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 2.1e-95 352.8 242 73.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.0e-74 283.1 244 60.2
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.0e-74 283.1 244 60.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.4e-72 275.0 244 60.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.6e-71 273.5 244 58.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 4.6e-71 271.9 244 58.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.0e-70 270.8 244 58.2
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.5e-69 266.2 248 56.0
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.2e-66 257.3 248 54.4
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.4e-66 255.8 244 56.1
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.8e-66 255.0 248 54.4
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.8e-66 255.0 246 55.7
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.6e-66 254.6 246 54.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 2.9e-65 252.7 247 55.1
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.9e-65 251.9 243 53.1
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 4.9e-65 251.9 244 56.1
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 6.5e-65 251.5 250 55.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 6.5e-65 251.5 241 56.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.9e-64 250.0 246 54.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.5e-64 249.6 247 53.8
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.5e-64 249.6 247 53.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.5e-64 249.6 244 54.9
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.5e-64 249.6 242 54.5
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.2e-64 249.2 242 55.0
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.2e-63 247.3 244 54.1
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-63 247.3 244 54.5
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.5e-63 245.7 243 52.7
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.5e-63 245.7 242 54.5
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 4.6e-63 245.4 246 53.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.0e-62 244.2 252 54.4
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.3e-62 243.8 245 51.8
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-62 243.8 242 53.3
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.8e-62 243.4 176 65.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.8e-62 243.4 242 53.7
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.3e-62 243.0 245 53.1
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.3e-62 243.0 244 52.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.0e-62 242.7 245 54.7
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 3.9e-62 242.3 246 52.8
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 6.7e-62 241.5 238 52.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.1e-61 240.7 244 50.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.1e-61 240.7 246 52.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.5e-61 240.4 246 54.1
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.9e-61 240.0 247 53.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.5e-61 239.6 239 54.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 4.3e-61 238.8 252 53.2
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 9.6e-61 237.7 238 53.8
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.3e-60 237.3 177 64.4
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.3e-60 237.3 247 52.6
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.3e-60 237.3 234 53.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.1e-60 236.5 243 53.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.8e-60 236.1 244 52.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.8e-60 236.1 244 52.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.8e-60 236.1 257 50.6
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.8e-60 236.1 250 50.4
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.7e-60 235.7 238 54.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.8e-60 235.3 244 52.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.2e-60 235.0 243 51.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 6.2e-60 235.0 237 53.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 6.2e-60 235.0 242 49.6
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.1e-59 234.2 245 51.4
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.1e-59 234.2 247 52.2
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.4e-59 233.8 238 53.4
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.4e-59 233.8 245 52.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.8e-59 233.4 249 49.4
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.8e-59 233.4 247 51.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 2.4e-59 233.0 177 63.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.4e-59 233.0 192 58.9
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.1e-59 232.6 246 52.0
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.1e-59 232.6 177 62.7
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.1e-59 232.3 247 52.6
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 5.3e-59 231.9 244 50.8
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 9.0e-59 231.1 215 56.3
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 9.0e-59 231.1 177 62.1
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.2e-58 230.7 248 50.8
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.2e-58 230.7 246 51.6
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.0e-58 229.9 242 50.8
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.6e-58 229.6 246 51.6
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.6e-58 229.6 246 51.6
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.6e-58 229.6 246 51.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.4e-58 229.2 247 51.4
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.5e-58 228.8 244 51.2
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 4.5e-58 228.8 243 52.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 5.8e-58 228.4 246 51.6
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.6e-58 228.0 176 62.5
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 7.6e-58 228.0 220 55.0
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 7.6e-58 228.0 248 52.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 7.6e-58 228.0 163 68.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 7.6e-58 228.0 247 51.0
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 7.6e-58 228.0 255 49.0
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 7.6e-58 228.0 252 49.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.0e-57 227.6 255 48.6
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-57 227.3 245 51.8
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-57 227.3 245 51.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.3e-57 227.3 246 50.0
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 2.2e-57 226.5 245 51.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.9e-57 226.1 244 52.0
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 5.0e-57 225.3 246 52.0
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-57 225.3 245 51.4
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-57 225.3 246 52.0
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 6.5e-57 224.9 244 51.6
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.4e-56 223.8 180 60.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.4e-56 223.8 245 49.4
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-56 223.4 176 61.9
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.9e-56 223.4 243 47.3
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 7.2e-56 221.5 178 60.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.2e-55 220.7 177 58.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.6e-55 218.8 225 52.0
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.3e-54 216.5 184 56.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.1e-54 215.3 234 48.3
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.3e-53 212.6 249 49.8
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.3e-53 212.6 151 66.2
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 7.4e-53 211.5 247 48.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.8e-52 209.5 245 46.9
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 2.8e-52 209.5 172 58.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 6.3e-52 208.4 172 57.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.1e-51 207.6 172 57.0
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.4e-51 207.2 237 47.7
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.4e-51 207.2 177 54.2
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.1e-51 206.1 226 49.6
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.9e-51 204.9 228 50.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-50 204.1 247 44.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 5.0e-49 198.7 229 46.3
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.9e-48 196.8 243 46.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 4.2e-48 195.7 192 51.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.4e-48 194.5 147 65.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.2e-47 194.1 158 57.0
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.1e-47 193.4 236 46.2
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-47 192.2 161 57.8
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.3e-46 189.9 193 49.7
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.9e-46 189.1 231 47.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 6.7e-46 188.3 225 48.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 8.8e-46 188.0 227 48.5
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.0e-45 186.8 172 53.5
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.3e-45 186.0 216 46.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.7e-44 183.7 184 51.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-42 177.2 162 56.2
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 7.7e-42 174.9 163 55.8
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-36 157.1 132 56.1
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.1e-35 151.4 147 56.5
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.7e-33 147.1 112 59.8
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.2e-32 142.9 179 43.6
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-29 134.0 106 57.5
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 9.7e-29 131.3 172 41.3
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 3.1e-27 126.3 149 45.6
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 4.5e-26 122.5 161 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.7e-25 120.6 192 36.5
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 4.7e-23 112.5 155 34.2
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 5.4e-19 99.0 168 39.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-18 97.8 74 63.5
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.3e-12 75.1 86 43.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 9.2e-11 71.6 107 43.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.1e-08 64.7 74 39.2


User provided reference genes

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