Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.4e-117 426.4 229 100.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-93 346.7 218 79.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 5.0e-91 338.2 227 75.8
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.5e-91 337.8 213 79.8
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.4e-74 280.8 214 66.4
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.4e-74 280.8 214 66.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.6e-73 280.0 214 65.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-73 280.0 214 65.9
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-73 280.0 214 65.9
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.6e-73 280.0 214 65.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.7e-73 279.3 208 67.3
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 2.7e-73 279.3 203 69.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.7e-73 279.3 211 65.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 4.7e-73 278.5 206 68.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-72 277.3 214 65.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-72 277.3 214 65.4
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.9e-72 275.4 206 65.5
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.9e-72 275.4 214 64.5
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 6.7e-72 274.6 208 67.3
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 6.7e-72 274.6 211 64.0
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 6.7e-72 274.6 206 65.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 6.7e-72 274.6 206 66.0
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 8.8e-72 274.2 200 68.0
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.1e-71 273.9 206 65.0
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-71 273.9 207 66.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.1e-71 273.9 207 66.2
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.1e-71 273.9 206 66.0
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.0e-71 273.1 209 64.1
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.0e-71 273.1 190 68.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.0e-71 273.1 207 65.7
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.3e-71 272.3 203 66.0
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.3e-71 272.3 196 67.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 4.4e-71 271.9 207 65.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 5.7e-71 271.6 204 65.2
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 5.7e-71 271.6 203 67.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 7.4e-71 271.2 218 62.4
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 7.4e-71 271.2 210 64.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 7.4e-71 271.2 208 63.9
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 9.7e-71 270.8 207 64.7
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.3e-70 270.4 213 64.8
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.3e-70 270.4 206 68.0
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 2.2e-70 269.6 207 65.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.2e-70 269.6 194 67.5
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.2e-70 269.6 206 65.5
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.7e-70 268.9 203 67.5
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.7e-70 268.9 204 65.2
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.8e-70 268.5 199 65.8
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.8e-70 268.5 204 64.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 8.2e-70 267.7 203 67.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 8.2e-70 267.7 213 63.4
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.1e-69 267.3 203 67.5
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.1e-69 267.3 211 63.0
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.1e-69 267.3 190 68.9
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.4e-69 266.9 204 63.7
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.8e-69 266.5 205 64.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.4e-69 266.2 207 64.7
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.1e-69 265.8 213 63.4
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.1e-69 265.4 200 65.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.1e-69 265.4 205 63.9
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.1e-69 265.4 204 63.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.3e-69 265.0 205 63.4
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 7.0e-69 264.6 183 69.9
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 9.1e-69 264.2 204 66.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 9.1e-69 264.2 204 66.7
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 9.1e-69 264.2 204 66.7
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 9.1e-69 264.2 202 66.3
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.1e-69 264.2 207 63.8
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 9.1e-69 264.2 189 68.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 9.1e-69 264.2 208 64.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.2e-68 263.8 207 63.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.2e-68 263.8 207 63.8
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-68 263.5 205 63.4
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.6e-68 263.5 189 66.7
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.0e-68 263.1 220 60.5
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.0e-68 263.1 186 68.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.6e-68 262.7 205 64.4
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 3.5e-68 262.3 204 66.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-68 262.3 183 67.8
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 4.5e-68 261.9 204 66.7
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 4.5e-68 261.9 204 63.7
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 4.5e-68 261.9 209 63.6
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.9e-68 261.5 214 63.1
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.9e-68 261.5 214 63.1
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 5.9e-68 261.5 183 69.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 7.7e-68 261.2 189 68.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 7.7e-68 261.2 189 68.3
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.0e-67 260.8 211 63.0
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.0e-67 260.8 202 65.8
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.3e-67 260.4 214 63.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.7e-67 260.0 202 65.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.7e-67 260.0 202 65.3
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.7e-67 260.0 202 65.3
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.7e-67 260.0 190 67.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.2e-67 259.6 202 65.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.2e-67 259.6 193 66.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 2.9e-67 259.2 206 62.6
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.0e-67 258.5 202 64.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 6.5e-67 258.1 202 64.9
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 6.5e-67 258.1 210 61.4
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.1e-66 257.3 189 67.2
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.9e-66 256.5 203 65.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.2e-66 255.8 211 61.6
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.2e-66 254.6 204 61.8
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.6e-65 253.4 184 66.8
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.6e-65 253.4 192 66.7
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.7e-65 252.7 188 67.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.6e-65 252.3 191 63.9
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 8.0e-65 251.1 195 62.6
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 8.0e-65 251.1 201 62.7
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.8e-64 250.0 194 62.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.0e-64 248.8 189 65.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.2e-63 247.3 185 64.3
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.2e-63 247.3 198 61.1
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.2e-62 243.0 180 62.8
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 4.8e-62 241.9 180 62.2
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.8e-61 240.0 187 66.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 5.3e-61 238.4 185 65.9
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.6e-60 236.9 202 60.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.0e-59 234.2 191 64.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.8e-59 232.3 191 63.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.5e-58 228.4 199 59.8
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 5.5e-58 228.4 194 58.8
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.6e-57 226.9 185 61.1
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.7e-54 216.9 158 68.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.4e-53 213.0 205 54.1
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 5.9e-52 208.4 160 66.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.9e-51 206.1 149 66.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.5e-50 203.0 215 54.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 6.8e-48 194.9 211 54.0
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.2e-46 189.9 165 60.0
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.9e-43 179.5 127 67.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 4.7e-41 172.2 112 70.5
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.6e-39 166.4 193 47.2
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.4e-37 160.6 114 67.5
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.6e-36 155.6 185 48.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.5e-34 149.8 108 65.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 3.3e-34 149.4 118 64.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.6e-31 139.8 108 61.1
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.1e-16 91.3 62 66.1
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.3e-11 74.3 51 62.7
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 4.0e-08 62.8 164 29.3
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.0e-07 60.5 150 29.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 4.4e-07 59.3 139 28.8
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 3.8e-06 56.2 143 28.0


User provided reference genes

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