Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 8.7e-171 603.6 316 100.0
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 2.4e-128 462.6 319 78.4
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 2.3e-126 456.1 320 78.1
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.1e-125 453.8 316 77.5
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.2e-108 397.1 304 71.7
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.3e-78 297.4 294 56.5
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.2e-73 280.0 293 56.3
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 1.2e-71 274.2 300 55.3
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.2e-71 274.2 292 53.4
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 3.5e-71 272.7 300 54.0
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 3.9e-70 269.2 295 54.6
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 4.3e-69 265.8 297 52.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.1e-67 261.2 299 53.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.1e-67 261.2 288 53.5
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 4.5e-66 255.8 298 52.7
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.3e-65 254.2 308 51.6
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-65 254.2 293 52.6
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 4.9e-65 252.3 298 52.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.5e-65 251.9 315 48.6
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.2e-63 247.7 297 49.5
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 7.9e-63 245.0 303 51.2
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 5.7e-61 238.8 313 50.2
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 7.4e-61 238.4 299 48.2
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 9.6e-61 238.0 315 50.2
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.6e-60 237.3 302 51.0
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.1e-60 236.9 313 49.8
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.8e-60 236.5 318 49.1
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.8e-60 236.5 313 49.8
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 3.7e-60 236.1 296 50.0
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.8e-60 235.7 313 49.8
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.2e-60 235.3 295 46.8
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 8.2e-60 235.0 299 51.8
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.1e-59 233.0 299 48.5
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 3.1e-59 233.0 295 52.5
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.2e-58 231.1 297 48.1
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.5e-58 230.7 304 47.0
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.0e-58 230.3 295 48.8
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.0e-58 230.3 294 51.0
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.8e-58 228.8 299 46.8
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 1.3e-57 227.6 297 47.8
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.9e-57 226.5 289 46.0
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 3.8e-57 226.1 297 47.5
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 3.8e-57 226.1 291 50.9
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 7.1e-56 221.9 295 44.1
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 9.3e-56 221.5 287 46.7
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 4.6e-55 219.2 297 46.8
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.3e-54 217.6 308 42.9
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.3e-54 217.6 309 43.0
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 3.0e-54 216.5 318 44.7
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 3.0e-54 216.5 282 49.3
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 3.0e-54 216.5 298 45.3
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 3.9e-54 216.1 296 46.3
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 8.7e-54 214.9 304 45.1
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 8.7e-54 214.9 298 45.0
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.1e-53 214.5 306 47.4
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.5e-53 214.2 295 45.1
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.5e-53 214.2 296 44.3
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.9e-53 213.8 300 45.0
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.6e-52 210.7 340 41.8
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 2.8e-52 209.9 305 44.3
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 3.7e-52 209.5 307 46.6
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 3.7e-52 209.5 293 43.3
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 6.3e-52 208.8 304 43.8
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.1e-51 208.0 309 43.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.1e-51 208.0 306 42.5
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.4e-51 207.6 298 44.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 1.8e-51 207.2 300 42.7
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.8e-51 207.2 334 42.5
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 5.3e-51 205.7 309 42.7
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 5.3e-51 205.7 309 42.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 5.3e-51 205.7 313 43.1
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 6.9e-51 205.3 297 44.1
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 9.0e-51 204.9 310 43.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.0e-51 204.9 297 44.1
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 2.6e-50 203.4 311 41.8
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 2.6e-50 203.4 311 41.5
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.4e-50 203.0 240 49.6
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 4.5e-50 202.6 310 41.3
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 4.5e-50 202.6 311 42.4
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 4.5e-50 202.6 294 43.2
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 4.5e-50 202.6 308 39.9
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.0e-49 201.4 287 46.3
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.3e-49 201.1 314 42.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 6.5e-49 198.7 334 41.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.1e-48 198.0 325 43.1
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.4e-48 197.6 256 46.1
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.9e-48 197.2 294 43.2
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.9e-48 197.2 294 43.2
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.2e-48 196.4 286 42.0
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 4.2e-48 196.1 301 43.2
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.2e-48 196.1 320 41.6
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.2e-48 196.1 320 41.6
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 7.2e-48 195.3 294 42.5
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.2e-47 194.5 304 41.1
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.6e-47 193.0 277 44.4
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.6e-47 192.6 320 40.0
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 3.0e-46 189.9 294 39.8
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 3.9e-46 189.5 307 42.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 8.8e-46 188.3 281 43.1
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.0e-45 187.2 320 39.1
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 9.7e-45 184.9 293 40.3
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 3.7e-44 183.0 304 40.8
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 8.2e-44 181.8 301 42.2
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 8.2e-44 181.8 301 42.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 4.1e-43 179.5 296 40.2
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 9.1e-43 178.3 279 41.2
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 5.9e-42 175.6 310 37.7
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 8.5e-41 171.8 303 40.9
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.1e-40 171.4 273 38.1
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.9e-40 170.6 261 43.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 3.2e-40 169.9 286 38.5
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 9.4e-40 168.3 197 54.3
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.4e-37 159.5 285 37.9
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.3e-36 157.9 285 40.4
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 1.3e-36 157.9 284 40.8
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 4.8e-36 156.0 308 39.0
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.5e-34 151.0 284 39.4
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 9.4e-32 141.7 254 39.8
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-31 141.0 278 37.1
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.7e-31 140.2 278 37.1
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 5.9e-26 122.5 267 35.6
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.2e-25 120.6 180 45.0
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 7.5e-21 105.5 175 40.6
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 9.1e-19 98.6 134 45.5
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 1.4e-14 84.7 270 29.6
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.2e-12 77.4 107 45.8
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 4.9e-12 76.3 117 43.6
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 6.3e-12 75.9 166 36.7


User provided reference genes

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