Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 4.2e-127 458.0 224 100.0
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.1e-116 423.3 224 90.2
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.1e-102 375.9 222 80.6
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 8.0e-102 374.0 217 82.5
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.4e-100 368.6 219 79.5
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 9.8e-100 367.1 222 79.3
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 6.3e-99 364.4 219 79.9
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 8.3e-99 364.0 222 80.2
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.1e-98 363.6 222 80.6
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.4e-98 363.2 216 79.2
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.1e-98 362.1 222 77.9
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 5.4e-98 361.3 213 80.8
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.6e-97 359.8 220 77.3
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.7e-97 359.0 219 77.2
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.2e-96 355.9 220 76.8
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 3.8e-96 355.1 212 80.2
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.0e-96 354.8 219 76.3
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-96 354.4 224 77.2
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.1e-95 353.6 219 76.3
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.9e-95 352.8 216 78.7
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.9e-95 352.8 210 78.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.5e-95 352.4 219 78.5
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.2e-95 352.1 211 80.1
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 7.2e-95 350.9 220 75.9
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.4e-95 350.5 219 75.8
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.2e-94 350.1 219 75.8
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 3.6e-94 348.6 212 77.4
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 3.6e-94 348.6 214 78.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 8.0e-94 347.4 219 77.6
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.4e-93 346.7 215 78.6
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.4e-93 346.7 219 76.3
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 5.2e-93 344.7 219 74.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 8.8e-93 344.0 210 78.6
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.2e-92 343.6 212 77.8
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.5e-92 343.2 209 77.5
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.6e-92 342.4 214 77.1
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 4.4e-92 341.7 214 75.7
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 4.4e-92 341.7 215 77.2
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 5.7e-92 341.3 219 75.8
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 7.5e-92 340.9 214 76.6
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 7.5e-92 340.9 213 76.1
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 7.5e-92 340.9 214 75.7
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-91 339.0 224 76.3
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-91 339.0 224 76.3
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-91 339.0 224 76.3
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-91 339.0 224 76.3
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-91 339.0 224 76.3
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 4.9e-91 338.2 225 72.9
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 6.3e-91 337.8 210 79.0
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-90 336.7 211 75.8
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 1.4e-90 336.7 214 75.7
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 4.1e-90 335.1 211 75.4
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 7.0e-90 334.3 225 72.4
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 7.0e-90 334.3 209 77.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 9.2e-90 334.0 211 74.9
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 9.2e-90 334.0 211 74.9
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 9.2e-90 334.0 209 78.0
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 9.2e-90 334.0 214 75.7
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.2e-89 333.6 209 77.0
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.0e-89 332.8 216 74.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 2.7e-89 332.4 209 75.1
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 5.9e-89 331.3 217 73.3
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.3e-88 330.1 222 73.0
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.3e-88 329.3 220 72.3
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.3e-88 329.3 220 70.9
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.6e-86 323.2 213 74.6
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 3.6e-86 322.0 209 75.6
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.7e-86 321.6 213 72.3
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 8.0e-86 320.9 221 71.0
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.8e-85 319.7 211 73.0
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.0e-84 316.2 213 71.4
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 2.6e-84 315.8 209 71.8
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.2e-83 312.8 216 69.0
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.9e-83 312.4 225 68.4
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.4e-82 309.3 220 69.5
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.2e-82 308.9 220 68.2
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.2e-82 308.9 215 72.6
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.2e-82 308.9 215 72.6
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 7.0e-82 307.8 212 71.7
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 9.2e-82 307.4 214 68.7
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.2e-81 307.0 219 69.4
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.6e-81 306.6 216 68.5
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 3.5e-81 305.4 212 70.3
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.5e-81 305.4 213 70.0
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 5.9e-81 304.7 219 68.9
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 5.9e-81 304.7 209 71.8
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 2.3e-80 302.8 217 68.7
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.9e-80 302.0 215 70.2
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.9e-80 302.0 215 69.8
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 3.9e-80 302.0 221 68.8
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-79 300.4 213 69.5
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.6e-78 296.6 220 68.2
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 2.1e-78 296.2 184 76.6
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.7e-78 295.0 210 70.0
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 8.0e-78 294.3 218 67.0
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.0e-77 293.9 211 69.7
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 5.2e-77 291.6 213 67.1
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 5.2e-77 291.6 219 67.6
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 6.8e-77 291.2 214 67.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 6.8e-77 291.2 214 67.3
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.2e-76 290.4 220 66.8
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 2.6e-76 289.3 215 65.1
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 3.4e-76 288.9 218 64.7
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 3.4e-76 288.9 218 64.7
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 7.5e-76 287.7 219 66.7
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.3e-75 287.0 209 67.0
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 1.7e-75 286.6 210 67.6
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.2e-75 286.2 220 66.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.2e-75 286.2 212 63.2
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 4.6e-73 278.5 210 66.2
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 6.0e-73 278.1 214 65.9
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 8.1e-70 267.7 215 61.4
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.1e-69 265.8 215 61.9
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 2.6e-68 262.7 216 59.7
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 3.4e-68 262.3 209 61.7
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 4.4e-68 261.9 165 77.0
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 3.7e-67 258.8 167 75.4
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 4.1e-66 255.4 209 61.7
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.3e-64 250.4 166 74.7
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.3e-64 250.4 219 59.8
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 2.3e-64 249.6 159 76.7
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.3e-63 245.7 215 54.9
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.1e-61 240.7 163 71.8
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.4e-61 240.4 168 72.0
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.2e-61 238.4 215 53.5
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 4.9e-59 231.9 171 67.8
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.1e-57 226.5 213 57.3
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 3.3e-55 219.2 130 75.4
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 3.3e-55 219.2 210 58.1
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 6.2e-54 214.9 137 74.5
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 8.9e-53 211.1 216 52.3
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 6.4e-51 204.9 213 52.6
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 4.2e-50 202.2 139 72.7
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 5.3e-45 185.3 219 51.1
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 5.8e-44 181.8 131 65.6
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 4.6e-33 145.6 92 78.3
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 3.3e-31 139.4 101 69.3
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 4.3e-31 139.0 89 75.3
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.8e-16 90.5 200 34.0
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 5.1e-08 62.4 134 29.9
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 7.4e-07 58.5 139 28.8
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 7.4e-07 58.5 163 29.4
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 1.3e-06 57.8 154 26.0
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 1.7e-06 57.4 158 26.6
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 1.7e-06 57.4 125 32.0
Nn1g04916 Nelumbo nucifera HOM05D003144 ORTHO05D003539 3.7e-06 56.2 159 28.9
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 3.7e-06 56.2 119 31.1
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 4.8e-06 55.8 140 30.7
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 8.2e-06 55.1 142 25.4
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 8.2e-06 55.1 156 28.8


User provided reference genes

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