Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 0.0e+00 1303.9 698 100.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 0.0e+00 1117.4 726 82.4
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 0.0e+00 1095.9 732 80.7
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 0.0e+00 1085.1 726 81.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.7e-241 839.0 747 61.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.1e-237 827.0 741 61.1
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.6e-236 822.4 746 59.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.7e-235 819.7 743 59.5
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.8e-235 818.5 759 59.3
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 5.0e-235 818.1 745 59.5
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-234 817.0 745 58.8
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 4.2e-234 815.1 742 59.7
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 7.2e-234 814.3 744 61.0
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.2e-234 814.3 743 58.7
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 9.4e-234 813.9 743 60.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 8.0e-233 810.8 727 60.4
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.1e-231 807.0 741 60.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.3e-231 805.4 743 58.1
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 9.7e-231 803.9 730 60.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-229 800.4 712 60.1
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 9.1e-229 797.3 759 58.2
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.2e-226 788.5 706 60.3
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 9.4e-226 787.3 728 58.9
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.7e-225 785.8 744 58.7
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.4e-224 783.5 795 56.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.8e-224 783.1 803 54.8
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 8.8e-224 780.8 721 59.4
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 5.7e-223 778.1 708 59.2
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.3e-222 776.9 765 56.9
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 8.3e-222 774.2 760 56.8
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.4e-221 772.7 773 56.4
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 3.1e-221 772.3 765 56.6
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 9.4e-218 760.8 750 59.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.4e-216 756.9 840 53.5
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 5.7e-215 751.5 840 53.2
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.8e-214 749.2 729 58.7
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.7e-214 748.8 765 55.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 4.8e-214 748.4 738 56.9
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 8.3e-214 747.7 765 55.9
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.6e-212 743.4 754 55.4
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.0e-211 740.7 742 55.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 4.2e-210 735.3 814 53.2
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.2e-209 733.8 821 52.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.2e-207 727.2 758 55.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 5.7e-207 724.9 837 51.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 7.5e-207 724.5 821 51.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 4.9e-206 721.8 822 51.5
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 6.3e-206 721.5 635 60.3
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-205 720.3 710 57.2
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.4e-205 720.3 764 55.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.8e-205 719.9 820 50.9
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 9.2e-205 717.6 830 52.0
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 7.8e-204 714.5 753 54.4
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.3e-203 713.0 805 51.9
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 3.9e-203 712.2 690 57.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 6.6e-203 711.4 775 52.4
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.8e-201 706.1 831 51.4
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.3e-200 703.0 775 54.3
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 6.8e-200 701.4 694 57.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 3.4e-199 699.1 735 53.3
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 5.8e-199 698.4 826 50.1
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.8e-199 698.4 802 51.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.8e-199 697.6 781 52.0
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.7e-198 696.8 723 54.2
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.4e-197 693.7 745 53.8
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.1e-197 692.2 720 53.5
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.0e-196 689.9 705 54.6
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.7e-196 689.5 718 54.9
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.3e-195 687.2 798 50.9
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.7e-195 686.8 732 54.5
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.7e-195 686.8 740 53.0
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 5.0e-195 685.3 767 53.3
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 7.3e-194 681.4 679 55.8
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.2e-193 680.6 724 52.6
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.7e-193 678.7 750 51.6
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.4e-192 677.2 692 54.9
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 3.1e-192 676.0 725 53.0
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 6.8e-192 674.9 716 53.9
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.5e-191 673.7 777 50.2
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.6e-191 672.9 652 57.8
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.6e-191 672.9 750 53.1
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 4.4e-191 672.2 710 53.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 7.5e-191 671.4 744 51.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.7e-190 670.2 745 52.5
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.9e-190 668.7 706 53.7
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.4e-189 666.4 710 53.0
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 4.1e-189 665.6 707 53.7
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 7.1e-189 664.8 707 55.2
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 9.2e-189 664.5 707 53.5
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.6e-188 662.1 697 54.9
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 7.8e-188 661.4 707 53.3
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.3e-187 660.6 708 53.0
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.0e-187 659.4 608 58.1
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.1e-186 657.5 742 50.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.5e-186 657.1 738 51.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 2.5e-186 656.4 712 52.8
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 3.6e-185 652.5 683 53.9
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 6.2e-185 651.7 825 47.2
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 2.3e-184 649.8 713 52.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.0e-183 646.7 715 53.0
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 5.4e-181 638.6 816 48.3
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 6.0e-180 635.2 756 49.7
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-179 634.4 712 52.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 2.4e-176 623.2 713 51.5
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 3.1e-176 622.9 747 49.5
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-175 620.2 712 52.0
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.6e-170 601.3 851 44.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 6.9e-168 595.1 693 51.2
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.5e-167 594.0 635 51.7
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 8.7e-163 578.2 433 65.4
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 6.4e-158 562.0 712 48.9
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.1e-154 551.2 738 45.9
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 8.1e-153 545.0 817 41.0
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.0e-151 540.4 831 41.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.1e-148 530.4 613 50.6
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.6e-140 504.2 743 43.1
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.1e-140 502.3 442 58.1
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 8.7e-139 498.4 835 38.7
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.9e-138 497.3 716 43.4
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.0e-131 474.9 503 51.9
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 7.2e-109 399.1 746 37.3
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.5e-101 374.8 469 45.4
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-93 348.6 299 58.5
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.0e-91 340.1 485 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.5e-90 338.2 480 43.8
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.8e-90 335.5 740 34.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-88 331.6 480 43.1
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-87 328.2 472 42.2
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.8e-79 299.3 482 38.6
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.8e-79 299.3 482 38.6
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.0e-78 297.4 436 39.0
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.9e-78 297.0 476 39.3
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.2e-76 289.7 474 39.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.4e-74 283.9 489 38.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 7.3e-69 266.2 581 38.4
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 4.6e-63 246.9 387 43.2
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.9e-62 243.8 520 40.2
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.5e-53 215.3 196 51.0
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-40 172.6 203 50.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-26 125.6 92 58.7
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.6e-26 123.2 392 33.9
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.1e-19 99.8 370 30.3
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.9e-18 97.1 71 66.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 2.9e-17 94.7 81 55.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.8e-14 85.5 205 32.2
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.5e-10 72.4 74 45.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-10 72.4 74 45.9
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 4.5e-10 70.9 53 56.6
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 4.5e-10 70.9 75 54.7
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.0e-09 69.7 53 52.8
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-08 65.1 53 49.1
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.5e-08 63.9 287 28.9
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.2e-07 62.8 45 68.9
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.1e-07 62.0 49 61.2


User provided reference genes

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